Rmu_co8352109.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8352109.1
OG0005293
Physical Location & Seq
Forward (+)
1 .. 400
400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8352109.1_g000001.1.cds

Sequence Viewer

Length: 400 bp
ttctggtgatctctttgtcccaagctcgatccaatccatctcctcgaaactggggttcttccagctcaccgacagctccatccctccccaactcgctaactcggccgagttggaagcactatcgctctttgacctacccagggagaagaaacaagcgagtttcccgaggaactggcctattgggtttgaggaaggagatgaagttgacaatgctgacgtggacagactcggcaagtcgttttgtctcaacgagttgtgttataccgagtctgctgggttgtccttggcttctctaagcgagttcagtcgtgctttggagaaagtagggttggaggtgattgatctgctttgtaggtcaatcgggtttgaaagtcctctagggaaggatgattggcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

132

Amino Acids

14.48

Weight (kDa)

4.28

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 369
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AluBI AGCT 3 cut(s) 25, 65, 76
AluI AGCT 3 cut(s) 25, 65, 76
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 103, 174
AsuHPI GGTGA 3 cut(s) 18, 59, 347
AvaI CYCGRG 1 cut(s) 164
BccI CCATC 2 cut(s) 45, 87
BciT130I CCWGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 138, 139, 165, 283
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 55, 177
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 138, 139, 165, 283
BseGI GGATG 2 cut(s) 79, 392
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 55, 177
BseRI GAGGAG 1 cut(s) 32
BseX3I CGGCCG 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 105, 176
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 2 cut(s) 105, 176
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 3 cut(s) 8, 28, 341
BspANI GGCC 2 cut(s) 105, 176
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 55, 177
BssECI CCNNGG 4 cut(s) 138, 139, 165, 283
BssMI GATC 3 cut(s) 8, 28, 341
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 79, 392
BstKTI GATC 3 cut(s) 11, 31, 344
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 3 cut(s) 8, 28, 341
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 105, 176
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 79, 392
CviJI RGCY 6 cut(s) 25, 65, 76, 105, 176, 288
CviKI_1 RGCY 6 cut(s) 25, 65, 76, 105, 176, 288
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 10, 30, 343
DpnII GATC 3 cut(s) 8, 28, 341
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaiI YATR 1 cut(s) 262
FaqI GGGAC 1 cut(s) 3
FokI GGATG 1 cut(s) 66
FspBI CTAG 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 2 cut(s) 105, 176
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
HinfI GANTC 2 cut(s) 226, 267
HphI GGTGA 3 cut(s) 18, 59, 347
Hpy166II GTNNAC 2 cut(s) 206, 221
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 206, 221
HpyAV CCTTC 2 cut(s) 186, 377
HpyCH4IV ACGT 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 217
Kzo9I GATC 3 cut(s) 8, 28, 341
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 36, 75, 125, 152, 158, 259
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 217
MalI GATC 3 cut(s) 10, 30, 343
MboI GATC 3 cut(s) 8, 28, 341
MboII GAAGA 2 cut(s) 50, 158
MlyI GAGTC 2 cut(s) 220, 276
MmeI TCCRAC 2 cut(s) 91, 310
MnlI CCTC 6 cut(s) 53, 94, 160, 182, 326, 385
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeII GATC 3 cut(s) 8, 28, 341
NmeAIII GCCGAG 3 cut(s) 81, 131, 208
PasI CCCWGGG 1 cut(s) 139
PleI GAGTC 2 cut(s) 220, 275
PpsI GAGTC 2 cut(s) 220, 275
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 1 cut(s) 138
Sau3AI GATC 3 cut(s) 8, 28, 341
SchI GAGTC 2 cut(s) 220, 276
ScrFI CCNGG 1 cut(s) 140
SetI ASST 7 cut(s) 27, 67, 78, 136, 220, 337, 357
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 27, 45
TspDTI ATGAA 1 cut(s) 214
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.