Rroxscaffold_2G00108140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005293
Physical Location & Seq
Reverse (-)
32121815 .. 32124716
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108140.1

Sequence Viewer

Length: 357 bp
ATGTCTTGGCATGGAAATCCTCTCACCGCCACTCCATCCCTCCCCAACTCGCCGACTCGGCCGAGTCGGAAGCTCTATCGCTCTTTGACCTACCCGGGGAGAAGAAAGAAGCGAGTTTCCCAAGGAACCGGCTTTGTTGGGTTTGAGGAAGGAGATGAAGTTGACGATGATGACGTGGACGGACTCGGCGAGTTGTTTTGTCTAAACGAGTCGTGTTATACCGAGTCTGCTGGGTTGTCCTTGGCTTCTCTAAGCGAGTTCGGTCGTGCTTTGGAGAAAGTAGGGTTGGAGGTGATTGATCCGCTTTGTAGGTCAATCGGGTTTGAAAGTCCTCTAGGGAAGGATGATTGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

4.73

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 27, 302
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 326
AjiI CACGTC 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 95, 96
AsuHPI GGTGA 2 cut(s) 16, 304
AvaI CYCGRG 1 cut(s) 94
BccI CCATC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 95, 96
BfaI CTAG 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 95, 96
BmeT110I CYCGRG 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 95, 96
BpuMI CCSGG 2 cut(s) 95, 96
BsaJI CCNNGG 4 cut(s) 94, 95, 121, 240
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 128
BseDI CCNNGG 4 cut(s) 94, 95, 121, 240
BseGI GGATG 2 cut(s) 35, 349
BseLI CCNNNNNNNGG 1 cut(s) 96
BseX3I CGGCCG 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 230
Bsh1285I CGRYCG 2 cut(s) 62, 265
BshFI GGCC 1 cut(s) 61
BsiEI CGRYCG 2 cut(s) 62, 265
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 95, 129
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 2 cut(s) 27, 302
BspANI GGCC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 94, 95, 121, 240
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 121, 240
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 35, 349
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMCI CGRYCG 2 cut(s) 62, 265
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 93, 94
BstZI CGGCCG 1 cut(s) 59
BsuRI GGCC 1 cut(s) 61
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 35, 349
Cfr10I RCCGGY 1 cut(s) 128
Cfr9I CCCGGG 1 cut(s) 94
CviAII CATG 1 cut(s) 11
CviJI RGCY 4 cut(s) 61, 73, 132, 245
CviKI_1 RGCY 4 cut(s) 61, 73, 132, 245
DdeI CTNAG 1 cut(s) 251
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 59
EagI CGGCCG 1 cut(s) 59
EclXI CGGCCG 1 cut(s) 59
Eco130I CCWWGG 2 cut(s) 121, 240
Eco52I CGGCCG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 121, 240
ErhI CCWWGG 2 cut(s) 121, 240
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 219
FatI CATG 1 cut(s) 10
FokI GGATG 1 cut(s) 22
FspBI CTAG 1 cut(s) 335
GsaI CCCAGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 61
HapII CCGG 2 cut(s) 95, 129
Hin1II CATG 1 cut(s) 14
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 5 cut(s) 55, 64, 183, 209, 224
HpaII CCGG 2 cut(s) 95, 129
HphI GGTGA 2 cut(s) 16, 304
Hpy166II GTNNAC 2 cut(s) 163, 178
Hpy188I TCNGA 1 cut(s) 69
Hpy8I GTNNAC 2 cut(s) 163, 178
HpyAV CCTTC 2 cut(s) 143, 334
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 1 cut(s) 298
LpnPI CCDG 3 cut(s) 108, 142, 216
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 114
MlyI GAGTC 5 cut(s) 49, 73, 177, 218, 233
MmeI TCCRAC 2 cut(s) 47, 267
MnlI CCTC 5 cut(s) 30, 50, 139, 283, 342
MspI CCGG 2 cut(s) 95, 129
MspR9I CCNGG 2 cut(s) 95, 96
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 2 cut(s) 95, 96
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 3 cut(s) 37, 87, 165
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 186
PleI GAGTC 5 cut(s) 49, 72, 177, 217, 232
PpsI GAGTC 5 cut(s) 49, 72, 177, 217, 232
PspFI CCCAGC 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 298
SchI GAGTC 5 cut(s) 49, 73, 177, 218, 233
ScrFI CCNGG 2 cut(s) 95, 96
SetI ASST 5 cut(s) 75, 92, 177, 294, 314
SmaI CCCGGG 1 cut(s) 96
SsiI CCGC 2 cut(s) 27, 302
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 93, 94
StyI CCWWGG 2 cut(s) 121, 240
TaiI ACGT 1 cut(s) 177
TaqII GACCGA 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 195
TspMI CCCGGG 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 94
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.