Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

46079358 .. 46082481

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG328200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTGTCCTCCGGTTCCGGTGGTGTCTTTGTCCCAAGCTCGATCCAACCCTAGTCTCTTCTCCTCGAAACTCGGGGAGAAGAAAGAAGCGTGTTTTCTGAGGAACTGGCCTGTTGGGTTTGAGGAAGGAGATGAAGTTGACGATGATGACGTGGACGGACTAGGCGAGTCGTTTTGTCTGGACGAGTCGTGTTATACCGAGTCTGCTGAGTTGTCCTTGGCTTCTCTAAGCGAGTTCAGTCGCGCTTTGGAGAAAGTAGGGTTGGAGGTGACTGAGCTGCTTTGTAGGTCAGTCGGGTTTGAAAGTCCTCTAGGGAAGGGTGACCCGAGTCCGACCCGGGTTTGTTCGATGATGTGGGTGGCGGAGGGTTTATCGGGCATGAGTAAGACGCCGGTGGCGGGTCGGTTTTACCCGTATGTGGTAGGATTGCAGTATCAAATCAGGGGTGGCCAGAAGTATTCTTTGCTGGCGGATTCGGGTTGGGTCTCGGTGGTGCCACTGGTGGAATCGGTCTTGGTCACTATTGGTGACATTGCTCAAAGTATTAAGAGCCTTAATGATGCATCAACTTCACTAGGGCAGTTGAAGCTTGTGTTTGTTGGGGACAAAGAAAGCTCACATGCTAGGCCAGGAATTCTACCTGTATATATGGGAATTACGAAAAAAATAAATATTAAGTTTCTCCAAGCAGCACAACTTACTAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

236

Amino Acids

25.49

Weight (kDa)

4.89

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AccII	CGCG	1 cut(s)	243
AciI	CCGC	3 cut(s)	362, 398, 470
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	633
AcyI	GRCGYC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	398, 418
AgsI	TTSAA	2 cut(s)	302, 586
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	38, 277, 589, 615
AluI	AGCT	4 cut(s)	38, 277, 589, 615
Alw26I	GTCTC	2 cut(s)	59, 490
AlwI	GGATC	1 cut(s)	36
Ama87I	CYCGRG	3 cut(s)	71, 325, 336
AoxI	GGCC	3 cut(s)	107, 448, 626
ApeKI	GCWGC	2 cut(s)	277, 689
ApoI	RAATTY	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	337, 338
AsuHPI	GGTGA	3 cut(s)	280, 332, 539
AvaI	CYCGRG	3 cut(s)	71, 325, 336
BalI	TGGCCA	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	264, 701
BciT130I	CCWGG	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	337, 338
BcoDI	GTCTC	2 cut(s)	59, 490
BfaI	CTAG	6 cut(s)	51, 161, 311, 575, 624, 702
BisI	GCNGC	2 cut(s)	278, 690
BlsI	GCNGC	2 cut(s)	279, 691
Bme1390I	CCNGG	3 cut(s)	337, 338, 630
BmeT110I	CYCGRG	3 cut(s)	71, 325, 336
BmgBI	CACGTC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	15, 495
BmrFI	CCNGG	3 cut(s)	337, 338, 630
BmsI	GCATC	2 cut(s)	550, 572
BoxI	GACNNNNGTC	1 cut(s)	327
BpuMI	CCSGG	2 cut(s)	337, 338
BsaHI	GRCGYC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	216, 336
BsaWI	WCCGGW	2 cut(s)	10, 16
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 418
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	110, 504
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	216, 336
BseLI	CCNNNNNNNGG	2 cut(s)	398, 418
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	89, 198, 264
BseNI	ACTGG	2 cut(s)	110, 504
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	264, 701
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	109, 450, 628
BshNI	GGYRCC	1 cut(s)	493
BsiHKCI	CYCGRG	3 cut(s)	71, 325, 336
BsiSI	CCGG	4 cut(s)	11, 17, 337, 392
BslFI	GGGAC	2 cut(s)	16, 617
BslI	CCNNNNNNNGG	2 cut(s)	398, 418
BsmAI	GTCTC	2 cut(s)	59, 490
BsmFI	GGGAC	2 cut(s)	16, 617
BsnI	GGCC	3 cut(s)	109, 450, 628
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	3 cut(s)	71, 325, 336
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	3 cut(s)	362, 398, 470
BspANI	GGCC	3 cut(s)	109, 450, 628
BspCNI	CTCAG	3 cut(s)	90, 199, 265
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	15, 495
BspPI	GGATC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	110, 504
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	216, 336
BssMI	GATC	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	630
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	98, 207, 227, 273
BstEII	GGTNACC	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	2 cut(s)	59, 490
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	623
BstPAI	GACNNNNGTC	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	335, 336, 628
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	264, 701
BsuRI	GGCC	3 cut(s)	109, 450, 628
BtrI	CACGTC	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	497
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	391
Cfr9I	CCCGGG	1 cut(s)	336
CseI	GACGC	1 cut(s)	397
CviAII	CATG	2 cut(s)	379, 620
CviJI	RGCY	9 cut(s)	38, 109, 221, 277, 450, 552, 589, 615, 628
CviKI_1	RGCY	9 cut(s)	38, 109, 221, 277, 450, 552, 589, 615, 628
DdeI	CTNAG	4 cut(s)	98, 207, 227, 273
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	2 cut(s)	377, 485
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	490
Eco88I	CYCGRG	3 cut(s)	71, 325, 336
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	382, 623
FaiI	YATR	8 cut(s)	195, 380, 417, 621, 646, 648, 650, 709
FaqI	GGGAC	2 cut(s)	16, 617
FatI	CATG	2 cut(s)	378, 619
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	278, 690
Fsp4HI	GCNGC	2 cut(s)	278, 690
FspBI	CTAG	6 cut(s)	51, 161, 311, 575, 624, 702
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	278, 690
HaeIII	GGCC	3 cut(s)	109, 450, 628
HapII	CCGG	4 cut(s)	11, 17, 337, 392
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	382, 623
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	6 cut(s)	167, 185, 200, 328, 473, 506
HpaII	CCGG	4 cut(s)	11, 17, 337, 392
HphI	GGTGA	3 cut(s)	280, 332, 539
Hpy166II	GTNNAC	2 cut(s)	139, 154
Hpy188I	TCNGA	2 cut(s)	99, 333
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	139, 154
HpyAV	CCTTC	2 cut(s)	119, 310
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	430, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	4 cut(s)	98, 207, 227, 273
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	382, 623
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	41
Lsp1109I	GCAGC	2 cut(s)	264, 701
LweI	GCATC	2 cut(s)	550, 572
MaeI	CTAG	6 cut(s)	51, 161, 311, 575, 624, 702
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	268, 320, 517, 527
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	2 cut(s)	49, 91
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	2 cut(s)	633, 654
MluNI	TGGCCA	1 cut(s)	450
MlyI	GAGTC	4 cut(s)	176, 194, 209, 337
MmeI	TCCRAC	3 cut(s)	69, 243, 356
MnlI	CCTC	7 cut(s)	18, 73, 93, 115, 259, 318, 358
Mox20I	TGGCCA	1 cut(s)	450
Mph1103I	ATGCAT	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	3 cut(s)	546, 555, 675
Msp20I	TGGCCA	1 cut(s)	450
MspI	CCGG	4 cut(s)	11, 17, 337, 392
MspR9I	CCNGG	3 cut(s)	337, 338, 630
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	586
NciI	CCSGG	2 cut(s)	337, 338
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	382, 623
NlaIV	GGNNCC	2 cut(s)	15, 495
NmuCI	GTSAC	4 cut(s)	268, 320, 517, 527
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 162
PfeI	GAWTC	2 cut(s)	473, 506
PkrI	GCNGC	2 cut(s)	279, 691
PleI	GAGTC	4 cut(s)	175, 193, 208, 336
PpsI	GAGTC	4 cut(s)	175, 193, 208, 336
PshAI	GACNNNNGTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	628
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	15, 495
SaqAI	TTAA	3 cut(s)	546, 555, 675
SatI	GCNGC	2 cut(s)	278, 690
Sau3AI	GATC	1 cut(s)	41
SchI	GAGTC	4 cut(s)	176, 194, 209, 337
ScrFI	CCNGG	3 cut(s)	337, 338, 630
SetI	ASST	8 cut(s)	40, 153, 270, 279, 290, 591, 617, 643
SfaNI	GCATC	2 cut(s)	550, 572
SgrAI	CRCCGGYG	1 cut(s)	391
SmaI	CCCGGG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	633, 654
SsiI	CCGC	3 cut(s)	362, 398, 470
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	6 cut(s)	51, 161, 311, 575, 624, 702
StyD4I	CCNGG	3 cut(s)	335, 336, 628
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	40, 65, 347
TaqII	GACCGA	1 cut(s)	499
TasI	AATT	2 cut(s)	633, 654
TfiI	GAWTC	2 cut(s)	473, 506
Tru1I	TTAA	3 cut(s)	546, 555, 675
Tru9I	TTAA	3 cut(s)	546, 555, 675
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	4 cut(s)	268, 320, 517, 527
TseI	GCWGC	2 cut(s)	277, 689
Tsp45I	GTSAC	4 cut(s)	268, 320, 517, 527
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	171
TspMI	CCCGGG	1 cut(s)	336
TspRI	CASTG	1 cut(s)	504
XapI	RAATTY	1 cut(s)	633
XceI	RCATGY	1 cut(s)	623
XmaI	CCCGGG	1 cut(s)	336
XspI	CTAG	6 cut(s)	51, 161, 311, 575, 624, 702
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.