RLG00000018784

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005293
Physical Location & Seq
Forward (+)
36036889 .. 36037236
348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018784

Sequence Viewer

Length: 348 bp
ATGTCCACATCAGCCGCGGCTGACGCCCTCTCGAGCATGCTCCACCGTCTTCCACCCACTCTCTCCCTCCCCACTCGCCGCGCACAGTCAGCCACGTGTCCTCCTGTTCCGATGGTCTCTTTCTCCCAAGCTCGATCCTTCTCCTCGAAACTCTGGTTCTTCCAGCTCACCGACCATTCCATCCCTCCCCAAATAGCTGACTCGGCAGAGTCGGAAGCGCTGTCACTCTTTGACCTACCCAGGGAGAAGAAAGAAGCGATTTCCCGAGGAACTGGCCTGTTGGGTTTGAGGAAGGAGATGAAGTTGACGATGATGACGTGGACGGACCCGATGAGTCATTTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

116

Amino Acids

12.76

Weight (kDa)

9.03

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 96 3.3e-06 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 81
AciI CCGC 3 cut(s) 15, 17, 79
AclWI GGATC 1 cut(s) 129
AcvI CACGTG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 95
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 3 cut(s) 131, 166, 197
AluI AGCT 3 cut(s) 131, 166, 197
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 129
Ama87I CYCGRG 2 cut(s) 31, 264
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 1 cut(s) 274
AspLEI GCGC 2 cut(s) 83, 220
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 2 cut(s) 31, 264
AvaII GGWCC 1 cut(s) 325
BbrPI CACGTG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 41
BccI CCATC 2 cut(s) 106, 188
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 121
BfoI RGCGCY 1 cut(s) 221
BisI GCNGC 3 cut(s) 15, 18, 79
BlsI GCNGC 3 cut(s) 16, 19, 80
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 325
BmeT110I CYCGRG 2 cut(s) 31, 264
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 4 cut(s) 15, 239, 240, 265
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 4 cut(s) 15, 239, 240, 265
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 17, 81
BshFI GGCC 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 31, 264
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 121
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 121
BsoBI CYCGRG 2 cut(s) 31, 264
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 3 cut(s) 15, 17, 79
BspANI GGCC 1 cut(s) 276
BspFNI CGCG 2 cut(s) 17, 81
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 4 cut(s) 15, 239, 240, 265
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 2 cut(s) 47, 87
BstACI GRCGYC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 38
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 2 cut(s) 17, 81
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 2 cut(s) 83, 220
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 3 cut(s) 23, 89, 203
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 239
BstUI CGCG 2 cut(s) 17, 81
BstV2I GAAGAC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 38
CfoI GCGC 2 cut(s) 83, 220
Cfr13I GGNCC 1 cut(s) 325
Cfr42I CCGCGG 1 cut(s) 18
CseI GACGC 1 cut(s) 32
CviAII CATG 1 cut(s) 37
CviJI RGCY 7 cut(s) 14, 20, 92, 131, 166, 197, 276
CviKI_1 RGCY 7 cut(s) 14, 20, 92, 131, 166, 197, 276
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 325
Eco47III AGCGCT 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 31, 264
EcoRII CCWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 15, 18, 79
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 15, 18, 79
GlaI GCGC 2 cut(s) 82, 219
GluI GCNGC 3 cut(s) 15, 18, 79
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 1 cut(s) 276
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 83, 220
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 2 cut(s) 81, 218
HinP1I GCGC 2 cut(s) 81, 218
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 3 cut(s) 200, 209, 334
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 3 cut(s) 6, 306, 321
Hpy188I TCNGA 2 cut(s) 111, 214
Hpy188III TCNNGA 2 cut(s) 31, 264
Hpy8I GTNNAC 3 cut(s) 6, 306, 321
HpyAV CCTTC 2 cut(s) 148, 286
HpyCH4III ACNGT 2 cut(s) 47, 87
HpyCH4IV ACGT 2 cut(s) 95, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 89, 203
HpySE526I ACGT 2 cut(s) 95, 317
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 2 cut(s) 81, 218
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 117, 139, 176, 226, 253, 258, 290
MaeII ACGT 2 cut(s) 95, 317
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 3 cut(s) 41, 151, 259
MlyI GAGTC 3 cut(s) 194, 218, 343
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 7 cut(s) 38, 77, 111, 154, 195, 260, 282
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 2 cut(s) 17, 81
MwoI GCNNNNNNNGC 3 cut(s) 23, 89, 203
NdeII GATC 1 cut(s) 134
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 327
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 222
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 31
PasI CCCWGGG 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PkrI GCNGC 3 cut(s) 16, 19, 80
PleI GAGTC 3 cut(s) 194, 217, 342
PmaCI CACGTG 1 cut(s) 96
PmlI CACGTG 1 cut(s) 96
PpsI GAGTC 3 cut(s) 194, 217, 342
Ppu21I YACGTR 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 239
PspCI CACGTG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 325
SacII CCGCGG 1 cut(s) 18
SatI GCNGC 3 cut(s) 15, 18, 79
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 3 cut(s) 194, 218, 343
ScrFI CCNGG 1 cut(s) 241
SetI ASST 6 cut(s) 98, 133, 168, 199, 237, 320
Sfr274I CTCGAG 1 cut(s) 31
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
SinI GGWCC 1 cut(s) 325
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SphI GCATGC 1 cut(s) 40
SsiI CCGC 3 cut(s) 15, 17, 79
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 47, 87
TaiI ACGT 2 cut(s) 98, 320
TaqI TCGA 3 cut(s) 32, 133, 146
TauI GCSGC 3 cut(s) 17, 20, 81
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 325
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.