Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

60062082 .. 60062885

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCACGGCGGCGCCACGTCAGCTCCTCCACCGACGCCATCGACCCAGCAGTCGGACAAACCCATGTCCACGTCAGCCGCGGCTGACGCCCTCTCGAGCATGCTCCACCATCTTCCACCCACTCTCTCTCTCCCCACTCGCCGCGCACAGCCAGCCACGTGTCCTCCGGTTCCGGTGGTGTCTTTGTCCCAAGCTCGATCCAACCCTAGTCTCTTCTCCTCGAAACTCGGGTTCTTCCAGCTCACCGACCACTCCATCCCTCCCCAACTCGCTGACTCGGCCGAGTCGGAAGCGCTGTCGCTCTTTGACCTATCCAGGGGGAAGAAAGAAGCGTGTTTTCCGAGGAACTGGCCTGTTGGGTTTGAGGAAGGAGATGAAGTTGACGATGATGACATGGACGGACTCGGCGAGTCGTTTTGTCTGGACGAATCGTGTTATACCGAGTCTGCTGAGTTGTCCTTGGCTTCTCTAAGCGAGTTCAGTCGTGCTTTGGAGAAAGTAGGGTTGGAGGTGACTGAGCTGCTTTGTAGGTCAGTCGGCTTTGAAAGTCCTCTAGGGAAGGGTGACCCGAGTCCGACCCGGGTTTGTTCGATGATGTGGGTGGCGGAAGGTTTATCCGGCAAGAGTAAGACGCCGGTGGCGGGTCGGTTTTACCCGTATGTGGTAGGATTGCAGTATCAAATCAGGGGTGGCCAGAAGTATTCTTTGCTGGCAGATTCGGGTTGGGTCTCGGTGGTGCCACTGGTGGAATCGGTCTTGGTCACTATTGGTGATATTGCTCAAGTAAGTTTCAAAGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

267

Amino Acids

28.52

Weight (kDa)

4.75

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccB1I	GGYRCC	2 cut(s)	11, 736
AccII	CGCG	2 cut(s)	80, 144
AciI	CCGC	6 cut(s)	9, 78, 80, 142, 605, 641
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	2 cut(s)	279, 691
AcvI	CACGTG	1 cut(s)	159
AcyI	GRCGYC	4 cut(s)	12, 35, 87, 632
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	4 cut(s)	52, 316, 641, 661
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	545, 793, 800
AjiI	CACGTC	2 cut(s)	18, 72
AjnI	CCWGG	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	4 cut(s)	23, 194, 241, 520
AluI	AGCT	4 cut(s)	23, 194, 241, 520
Alw26I	GTCTC	2 cut(s)	215, 733
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	4 cut(s)	94, 227, 568, 579
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	3 cut(s)	279, 350, 691
ApeKI	GCWGC	1 cut(s)	520
AspLEI	GCGC	3 cut(s)	14, 146, 295
AsuC2I	CCSGG	2 cut(s)	580, 581
AsuHPI	GGTGA	4 cut(s)	235, 523, 575, 782
AvaI	CYCGRG	4 cut(s)	94, 227, 568, 579
BalI	TGGCCA	1 cut(s)	693
BanI	GGYRCC	2 cut(s)	11, 736
BbrPI	CACGTG	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	3 cut(s)	46, 117, 263
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	580, 581
BcoDI	GTCTC	2 cut(s)	215, 733
BfaI	CTAG	2 cut(s)	207, 554
BfoI	RGCGCY	2 cut(s)	15, 296
BisI	GCNGC	5 cut(s)	10, 78, 81, 142, 521
BlsI	GCNGC	5 cut(s)	11, 79, 82, 143, 522
Bme1390I	CCNGG	3 cut(s)	316, 580, 581
BmeT110I	CYCGRG	4 cut(s)	94, 227, 568, 579
BmgBI	CACGTC	2 cut(s)	18, 72
BmiI	GGNNCC	3 cut(s)	13, 171, 738
BmrFI	CCNGG	3 cut(s)	316, 580, 581
BoxI	GACNNNNGTC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	765
BpuMI	CCSGG	2 cut(s)	580, 581
BsaAI	YACGTR	1 cut(s)	159
BsaHI	GRCGYC	4 cut(s)	12, 35, 87, 632
BsaI	GGTCTC	1 cut(s)	733
BsaJI	CCNNGG	5 cut(s)	78, 315, 341, 459, 579
BsaWI	WCCGGW	2 cut(s)	166, 172
BsaXI	ACNNNNNCTCC	6 cut(s)	7, 37, 148, 178, 363, 393
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 316, 641, 661
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	353, 747
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	5 cut(s)	78, 315, 341, 459, 579
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	4 cut(s)	52, 316, 641, 661
BseMII	CTCAG	2 cut(s)	441, 507
BseNI	ACTGG	2 cut(s)	353, 747
BseRI	GAGGAG	2 cut(s)	15, 208
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	507
BseYI	CCCAGC	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	80, 144
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	281, 352, 693
BshNI	GGYRCC	2 cut(s)	11, 736
BsiEI	CGRYCG	1 cut(s)	282
BsiHKCI	CYCGRG	4 cut(s)	94, 227, 568, 579
BsiSI	CCGG	5 cut(s)	167, 173, 580, 618, 635
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	4 cut(s)	52, 316, 641, 661
BsmAI	GTCTC	2 cut(s)	215, 733
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	281, 352, 693
Bso31I	GGTCTC	1 cut(s)	733
BsoBI	CYCGRG	4 cut(s)	94, 227, 568, 579
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	6 cut(s)	9, 78, 80, 142, 605, 641
BspANI	GGCC	3 cut(s)	281, 352, 693
BspCNI	CTCAG	2 cut(s)	442, 508
BspFNI	CGCG	2 cut(s)	80, 144
BspLI	GGNNCC	3 cut(s)	13, 171, 738
BspPI	GGATC	1 cut(s)	192
BspT107I	GGYRCC	2 cut(s)	11, 736
BspTNI	GGTCTC	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	2 cut(s)	353, 747
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	5 cut(s)	78, 315, 341, 459, 579
BssMI	GATC	1 cut(s)	197
BssNI	GRCGYC	4 cut(s)	12, 35, 87, 632
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	4 cut(s)	12, 35, 87, 632
BstBAI	YACGTR	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	101, 153, 711
BstDEI	CTNAG	3 cut(s)	450, 470, 516
BstDSI	CCRYGG	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	2 cut(s)	80, 144
BstH2I	RGCGCY	2 cut(s)	15, 296
BstHHI	GCGC	3 cut(s)	14, 146, 295
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	2 cut(s)	215, 733
BstMBI	GATC	1 cut(s)	197
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 86, 152, 278
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	314, 578, 579
BstUI	CGCG	2 cut(s)	80, 144
BstV1I	GCAGC	1 cut(s)	507
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	281, 352, 693
BtgI	CCRYGG	1 cut(s)	78
BtrI	CACGTC	2 cut(s)	18, 72
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	740
Cac8I	GCNNGC	3 cut(s)	101, 153, 711
CfoI	GCGC	3 cut(s)	14, 146, 295
Cfr10I	RCCGGY	1 cut(s)	634
Cfr42I	CCGCGG	1 cut(s)	81
Cfr9I	CCCGGG	1 cut(s)	579
CseI	GACGC	3 cut(s)	43, 95, 640
CviAII	CATG	3 cut(s)	64, 100, 394
DdeI	CTNAG	3 cut(s)	450, 470, 516
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	2 cut(s)	279, 691
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	620
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	733
Eco47III	AGCGCT	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	279
Eco72I	CACGTG	1 cut(s)	159
Eco88I	CYCGRG	4 cut(s)	94, 227, 568, 579
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	459
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	67, 103, 397
FaiI	YATR	5 cut(s)	65, 101, 395, 438, 660
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	63, 99, 393
FauI	CCCGC	1 cut(s)	634
Fnu4HI	GCNGC	5 cut(s)	10, 78, 81, 142, 521
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	10, 78, 81, 142, 521
FspBI	CTAG	2 cut(s)	207, 554
GlaI	GCGC	3 cut(s)	13, 145, 294
GluI	GCNGC	5 cut(s)	10, 78, 81, 142, 521
GsaI	CCCAGC	1 cut(s)	49
HaeII	RGCGCY	2 cut(s)	15, 296
HaeIII	GGCC	3 cut(s)	281, 352, 693
HapII	CCGG	5 cut(s)	167, 173, 580, 618, 635
HgaI	GACGC	3 cut(s)	43, 95, 640
HhaI	GCGC	3 cut(s)	14, 146, 295
Hin1I	GRCGYC	4 cut(s)	12, 35, 87, 632
Hin1II	CATG	3 cut(s)	67, 103, 397
Hin6I	GCGC	3 cut(s)	12, 144, 293
HinP1I	GCGC	3 cut(s)	12, 144, 293
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	9 cut(s)	275, 284, 402, 410, 428, 443, 571, 716, 749
HpaII	CCGG	5 cut(s)	167, 173, 580, 618, 635
HphI	GGTGA	4 cut(s)	235, 523, 575, 782
Hpy166II	GTNNAC	2 cut(s)	69, 382
Hpy188I	TCNGA	4 cut(s)	55, 289, 342, 576
Hpy188III	TCNNGA	2 cut(s)	94, 422
Hpy8I	GTNNAC	2 cut(s)	69, 382
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	362, 553, 602
HpyCH4IV	ACGT	3 cut(s)	17, 71, 158
HpyCH4V	TGCA	2 cut(s)	4, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 86, 152, 278
HpyF3I	CTNAG	3 cut(s)	450, 470, 516
HpySE526I	ACGT	3 cut(s)	17, 71, 158
Hsp92I	GRCGYC	4 cut(s)	12, 35, 87, 632
Hsp92II	CATG	3 cut(s)	67, 103, 397
HspAI	GCGC	3 cut(s)	12, 144, 293
KasI	GGCGCC	1 cut(s)	11
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	28, 108
Lsp1109I	GCAGC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	207, 554
MaeII	ACGT	3 cut(s)	17, 71, 158
MaeIII	GTNAC	3 cut(s)	511, 563, 760
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	4 cut(s)	104, 205, 226, 334
MlsI	TGGCCA	1 cut(s)	693
MluNI	TGGCCA	1 cut(s)	693
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	6 cut(s)	269, 293, 396, 419, 452, 580
MmeI	TCCRAC	5 cut(s)	33, 225, 267, 486, 599
MnlI	CCTC	9 cut(s)	36, 101, 174, 229, 270, 336, 358, 502, 561
Mox20I	TGGCCA	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	693
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	5 cut(s)	167, 173, 580, 618, 635
MspR9I	CCNGG	3 cut(s)	316, 580, 581
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	2 cut(s)	80, 144
MwoI	GCNNNNNNNGC	4 cut(s)	20, 86, 152, 278
NarI	GGCGCC	1 cut(s)	12
NciI	CCSGG	2 cut(s)	580, 581
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	3 cut(s)	67, 103, 397
NlaIV	GGNNCC	3 cut(s)	13, 171, 738
NmeAIII	GCCGAG	3 cut(s)	257, 307, 384
NmuCI	GTSAC	3 cut(s)	511, 563, 760
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	428, 716, 749
PkrI	GCNGC	5 cut(s)	11, 79, 82, 143, 522
PleI	GAGTC	6 cut(s)	269, 292, 396, 418, 451, 579
PluTI	GGCGCC	1 cut(s)	15
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
PpsI	GAGTC	6 cut(s)	269, 292, 396, 418, 451, 579
Ppu21I	YACGTR	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	3 cut(s)	13, 171, 738
SacII	CCGCGG	1 cut(s)	81
SatI	GCNGC	5 cut(s)	10, 78, 81, 142, 521
Sau3AI	GATC	1 cut(s)	197
SchI	GAGTC	6 cut(s)	269, 293, 396, 419, 452, 580
ScrFI	CCNGG	3 cut(s)	316, 580, 581
SfoI	GGCGCC	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	94
Sfr303I	CCGCGG	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	634
SgrBI	CCGCGG	1 cut(s)	81
SlaI	CTCGAG	1 cut(s)	94
SmaI	CCCGGG	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	94, 780
SmoI	CTYRAG	2 cut(s)	94, 780
SphI	GCATGC	1 cut(s)	103
SsiI	CCGC	6 cut(s)	9, 78, 80, 142, 605, 641
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	207, 554
StyD4I	CCNGG	3 cut(s)	314, 578, 579
StyI	CCWWGG	1 cut(s)	459
TaiI	ACGT	3 cut(s)	20, 74, 161
TaqI	TCGA	5 cut(s)	41, 95, 196, 221, 590
TaqII	GACCGA	1 cut(s)	742
TauI	GCSGC	4 cut(s)	12, 80, 83, 144
TfiI	GAWTC	3 cut(s)	428, 716, 749
TscAI	CASTG	1 cut(s)	747
TseFI	GTSAC	3 cut(s)	511, 563, 760
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	3 cut(s)	511, 563, 760
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	414
TspMI	CCCGGG	1 cut(s)	579
TspRI	CASTG	1 cut(s)	747
XceI	RCATGY	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	94
XmaI	CCCGGG	1 cut(s)	579
XspI	CTAG	2 cut(s)	207, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.