Rmu_sc0005656.1_g000013

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005656.1
Physical Location & Seq
Forward (+)
55998 .. 57600
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005656.1_g000013.1.cds

Sequence Viewer

Length: 1173 bp
atgcacggcggcgccacgtcagctccgccaccgacgccatcgacccagcagtcggacaaacccatgtccacgtcagccgcggctgacgccctctcgagcatgctccaccgtcttccacccactctctccctccccactcgccgcgcacagccagccacgtgtcctccggttccggtggtgtctttgtcccaagctcgatccaaccctagtctcttctcctcgaaactcgggttcttccagctcaccgaccactccatccctccccaactcgctgactcggccgagtcggaatcgctgtcgctctttgacctatccagggagaagaaagaagcgtgttttccgaggaactggcctgttgggtttgaggaaggagatgaagttgacgatgatgacgtggacggactcggcgagtcgttttgtctggacgaatcgtgttataccgagtctgctgagttgtccttggcttctctaagcgagttcagtcgtgctctggagaaagtagggttggaggtgactgagctgctttgtaggtcagtcgggtttgaaagtcctctagggaagggtgacccgagtccgacccgggtttgttcgatgatgtgggtggcggaaggtttatcgggcaagagtaagacgccggtggcgggtcggttttacccgtatgtggtaggattgcagtatcaaatcaggggtggccagaagtattctttgctggcagattcgggttgggtctcggtggtgccactggtggaatcggtcttggtcactattggtgatattgctcaagtatggagcaatggggagttgaagaaagtgagaggaaggccagtggcaggtttgggagagggtaacaacaagtcacggtgcatatcgatgtcgttgttggtgactcttcctatcgacactaaaatttcccctgttcttccggcagcagccataagcggaggtgatcacagtcacaaggatgatgataatgatgaagatggaaatggaagaaatgttgatgaactgggagatcatcaaatcaatgatagcagtatagtcagtactggtgaaaatagagaaactgaaggaaggttgttcaagtccttttgtttggaagactatgcttggagagtgtatcatgaacgtctgcatttcaaagacccgctcgataggtttcgcattaagaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

42.33

Weight (kDa)

4.95

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 11, 736
AccBSI CCGCTC 1 cut(s) 1147
AccII CGCG 2 cut(s) 80, 144
AciI CCGC 9 cut(s) 9, 26, 78, 80, 142, 605, 641, 939, 1145
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 2 cut(s) 279, 691
AcsI RAATTY 1 cut(s) 906
AcuI CTGAAG 1 cut(s) 1086
AcvI CACGTG 1 cut(s) 159
AcyI GRCGYC 4 cut(s) 12, 35, 87, 632
AfaI GTAC 1 cut(s) 1045
AfiI CCNNNNNNNGG 5 cut(s) 52, 316, 641, 661, 830
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 4 cut(s) 545, 805, 1081, 1138
AjiI CACGTC 3 cut(s) 18, 72, 394
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 4 cut(s) 23, 194, 241, 520
AluI AGCT 4 cut(s) 23, 194, 241, 520
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 215, 733
AlwI GGATC 1 cut(s) 192
Ama87I CYCGRG 4 cut(s) 94, 227, 568, 579
AoxI GGCC 4 cut(s) 279, 350, 691, 821
ApeKI GCWGC 3 cut(s) 520, 926, 929
ApoI RAATTY 1 cut(s) 906
AspLEI GCGC 2 cut(s) 14, 146
AsuC2I CCSGG 2 cut(s) 580, 581
AsuHPI GGTGA 7 cut(s) 235, 523, 575, 782, 895, 956, 1061
AvaI CYCGRG 4 cut(s) 94, 227, 568, 579
BalI TGGCCA 1 cut(s) 693
BanI GGYRCC 2 cut(s) 11, 736
BbrPI CACGTG 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 104, 1104
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 3 cut(s) 507, 938, 941
BccI CCATC 3 cut(s) 46, 263, 974
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 2 cut(s) 580, 581
BcoDI GTCTC 2 cut(s) 215, 733
BfaI CTAG 2 cut(s) 207, 554
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 821
BisI GCNGC 7 cut(s) 10, 78, 81, 142, 521, 927, 930
BlsI GCNGC 7 cut(s) 11, 79, 82, 143, 522, 928, 931
BmcAI AGTACT 1 cut(s) 1045
Bme1390I CCNGG 3 cut(s) 316, 580, 581
BmeT110I CYCGRG 4 cut(s) 94, 227, 568, 579
BmgBI CACGTC 3 cut(s) 18, 72, 394
BmiI GGNNCC 3 cut(s) 13, 171, 738
BmrFI CCNGG 3 cut(s) 316, 580, 581
BmrI ACTGGG 1 cut(s) 1016
BmuI ACTGGG 1 cut(s) 1016
BoxI GACNNNNGTC 1 cut(s) 570
BpiI GAAGAC 2 cut(s) 104, 1104
BpmI CTGGAG 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 765
BpuMI CCSGG 2 cut(s) 580, 581
Bsa29I ATCGAT 1 cut(s) 869
BsaAI YACGTR 1 cut(s) 159
BsaHI GRCGYC 4 cut(s) 12, 35, 87, 632
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 5 cut(s) 78, 315, 341, 459, 579
BsaWI WCCGGW 2 cut(s) 166, 172
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 148, 178, 363, 393
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 316, 641, 661, 830
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 5 cut(s) 353, 747, 824, 1011, 1051
Bse3DI GCAATG 1 cut(s) 799
BseBI CCWGG 1 cut(s) 316
BseCI ATCGAT 1 cut(s) 869
BseDI CCNNGG 5 cut(s) 78, 315, 341, 459, 579
BseGI GGATG 2 cut(s) 255, 967
BseLI CCNNNNNNNGG 5 cut(s) 52, 316, 641, 661, 830
BseMI GCAATG 1 cut(s) 799
BseMII CTCAG 2 cut(s) 441, 507
BseNI ACTGG 5 cut(s) 353, 747, 824, 1011, 1051
BseRI GAGGAG 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 507, 938, 941
BseYI CCCAGC 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 80, 144
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 4 cut(s) 281, 352, 693, 823
BshNI GGYRCC 2 cut(s) 11, 736
BshVI ATCGAT 1 cut(s) 869
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 4 cut(s) 94, 227, 568, 579
BsiSI CCGG 5 cut(s) 167, 173, 580, 635, 923
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 5 cut(s) 52, 316, 641, 661, 830
BsmAI GTCTC 2 cut(s) 215, 733
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 4 cut(s) 281, 352, 693, 823
Bso31I GGTCTC 1 cut(s) 733
BsoBI CYCGRG 4 cut(s) 94, 227, 568, 579
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 3 cut(s) 197, 946, 1012
BspACI CCGC 9 cut(s) 9, 26, 78, 80, 142, 605, 641, 939, 1145
BspANI GGCC 4 cut(s) 281, 352, 693, 823
BspCNI CTCAG 2 cut(s) 442, 508
BspDI ATCGAT 1 cut(s) 869
BspFNI CGCG 2 cut(s) 80, 144
BspHI TCATGA 1 cut(s) 1120
BspLI GGNNCC 3 cut(s) 13, 171, 738
BspMI ACCTGC 1 cut(s) 821
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 2 cut(s) 11, 736
BspTNI GGTCTC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 1147
BsrDI GCAATG 1 cut(s) 799
BsrFI RCCGGY 1 cut(s) 634
BsrI ACTGG 5 cut(s) 353, 747, 824, 1011, 1051
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 5 cut(s) 78, 315, 341, 459, 579
BssMI GATC 3 cut(s) 197, 946, 1012
BssNI GRCGYC 4 cut(s) 12, 35, 87, 632
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 110, 861, 953
Bst6I CTCTTC 2 cut(s) 218, 894
BstACI GRCGYC 4 cut(s) 12, 35, 87, 632
BstBAI YACGTR 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 101, 153, 711
BstDEI CTNAG 3 cut(s) 450, 470, 516
BstDSI CCRYGG 1 cut(s) 78
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 2 cut(s) 255, 967
BstFNI CGCG 2 cut(s) 80, 144
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 146
BstKTI GATC 3 cut(s) 200, 949, 1015
BstMAI GTCTC 2 cut(s) 215, 733
BstMBI GATC 3 cut(s) 197, 946, 1012
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 5 cut(s) 20, 34, 86, 152, 278
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 103
BstPAI GACNNNNGTC 1 cut(s) 570
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 314, 578, 579
BstUI CGCG 2 cut(s) 80, 144
BstV1I GCAGC 3 cut(s) 507, 938, 941
BstV2I GAAGAC 2 cut(s) 104, 1104
BstZI CGGCCG 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 869
BsuRI GGCC 4 cut(s) 281, 352, 693, 823
BsuTUI ATCGAT 1 cut(s) 869
BtgI CCRYGG 1 cut(s) 78
BtrI CACGTC 3 cut(s) 18, 72, 394
BtsCI GGATG 2 cut(s) 255, 967
BtsIMutI CAGTG 2 cut(s) 740, 831
BveI ACCTGC 1 cut(s) 821
Cac8I GCNNGC 3 cut(s) 101, 153, 711
CciI TCATGA 1 cut(s) 1120
CfoI GCGC 2 cut(s) 14, 146
Cfr10I RCCGGY 1 cut(s) 634
Cfr42I CCGCGG 1 cut(s) 81
Cfr9I CCCGGG 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 869
CseI GACGC 3 cut(s) 43, 95, 640
Csp6I GTAC 1 cut(s) 1044
CviAII CATG 3 cut(s) 64, 100, 1121
CviQI GTAC 1 cut(s) 1044
DdeI CTNAG 3 cut(s) 450, 470, 516
DinI GGCGCC 1 cut(s) 13
DpnI GATC 3 cut(s) 199, 948, 1014
DpnII GATC 3 cut(s) 197, 946, 1012
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 2 cut(s) 279, 691
EagI CGGCCG 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 218, 894
EarI CTCTTC 2 cut(s) 218, 894
EciI GGCGGA 2 cut(s) 15, 620
EclXI CGGCCG 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 459
Eco31I GGTCTC 1 cut(s) 733
Eco52I CGGCCG 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 1086
Eco72I CACGTG 1 cut(s) 159
Eco88I CYCGRG 4 cut(s) 94, 227, 568, 579
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 459
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 3 cut(s) 67, 103, 1124
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 63, 99, 1120
FauI CCCGC 2 cut(s) 634, 1152
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 7 cut(s) 10, 78, 81, 142, 521, 927, 930
FokI GGATG 2 cut(s) 242, 974
Fsp4HI GCNGC 7 cut(s) 10, 78, 81, 142, 521, 927, 930
FspBI CTAG 2 cut(s) 207, 554
GlaI GCGC 2 cut(s) 13, 145
GluI GCNGC 7 cut(s) 10, 78, 81, 142, 521, 927, 930
GsaI CCCAGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 281, 352, 693, 823
HapII CCGG 5 cut(s) 167, 173, 580, 635, 923
HgaI GACGC 3 cut(s) 43, 95, 640
HhaI GCGC 2 cut(s) 14, 146
Hin1I GRCGYC 4 cut(s) 12, 35, 87, 632
Hin1II CATG 3 cut(s) 67, 103, 1124
Hin6I GCGC 2 cut(s) 12, 144
HinP1I GCGC 2 cut(s) 12, 144
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HpaII CCGG 5 cut(s) 167, 173, 580, 635, 923
HphI GGTGA 7 cut(s) 235, 523, 575, 782, 895, 956, 1061
Hpy166II GTNNAC 3 cut(s) 69, 382, 397
Hpy188I TCNGA 4 cut(s) 55, 289, 342, 576
Hpy188III TCNNGA 4 cut(s) 94, 422, 491, 1121
Hpy8I GTNNAC 3 cut(s) 69, 382, 397
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 6 cut(s) 362, 553, 602, 813, 1061, 1065
HpyCH4III ACNGT 3 cut(s) 110, 861, 953
HpyCH4IV ACGT 5 cut(s) 17, 71, 158, 393, 1126
HpyCH4V TGCA 4 cut(s) 4, 673, 864, 1132
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 34, 86, 152, 278
HpyF3I CTNAG 3 cut(s) 450, 470, 516
HpySE526I ACGT 5 cut(s) 17, 71, 158, 393, 1126
Hsp92I GRCGYC 4 cut(s) 12, 35, 87, 632
Hsp92II CATG 3 cut(s) 67, 103, 1124
HspAI GCGC 2 cut(s) 12, 144
KasI GGCGCC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 946
KspI CCGCGG 1 cut(s) 81
Kzo9I GATC 3 cut(s) 197, 946, 1012
LmnI GCTCC 3 cut(s) 28, 108, 789
Lsp1109I GCAGC 3 cut(s) 507, 938, 941
MaeI CTAG 2 cut(s) 207, 554
MaeII ACGT 5 cut(s) 17, 71, 158, 393, 1126
MaeIII GTNAC 7 cut(s) 511, 563, 760, 845, 855, 883, 953
MalI GATC 3 cut(s) 199, 948, 1014
MbiI CCGCTC 1 cut(s) 1147
MboI GATC 3 cut(s) 197, 946, 1012
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 2 cut(s) 906, 1168
MluNI TGGCCA 1 cut(s) 693
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 7 cut(s) 269, 293, 396, 419, 452, 580, 880
MmeI TCCRAC 5 cut(s) 33, 225, 267, 486, 599
Mox20I TGGCCA 1 cut(s) 693
MscI TGGCCA 1 cut(s) 693
MseI TTAA 1 cut(s) 1164
MslI CAYNNNNRTG 2 cut(s) 869, 960
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 5 cut(s) 167, 173, 580, 635, 923
MspR9I CCNGG 3 cut(s) 316, 580, 581
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 2 cut(s) 80, 144
MwoI GCNNNNNNNGC 5 cut(s) 20, 34, 86, 152, 278
NarI GGCGCC 1 cut(s) 12
NciI CCSGG 2 cut(s) 580, 581
NdeII GATC 3 cut(s) 197, 946, 1012
NlaIII CATG 3 cut(s) 67, 103, 1124
NlaIV GGNNCC 3 cut(s) 13, 171, 738
NmeAIII GCCGAG 3 cut(s) 257, 307, 384
NmuCI GTSAC 6 cut(s) 511, 563, 760, 855, 883, 953
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 94
PagI TCATGA 1 cut(s) 1120
PcsI WCGNNNNNNNCGW 2 cut(s) 390, 405
PfeI GAWTC 4 cut(s) 290, 428, 716, 749
PkrI GCNGC 7 cut(s) 11, 79, 82, 143, 522, 928, 931
PleI GAGTC 7 cut(s) 269, 292, 396, 418, 451, 579, 880
PluTI GGCGCC 1 cut(s) 15
PmaCI CACGTG 1 cut(s) 159
PmlI CACGTG 1 cut(s) 159
PpsI GAGTC 7 cut(s) 269, 292, 396, 418, 451, 579, 880
Ppu21I YACGTR 1 cut(s) 159
PshAI GACNNNNGTC 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 314
PspCI CACGTG 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 3 cut(s) 13, 171, 738
RsaI GTAC 1 cut(s) 1045
RsaNI GTAC 1 cut(s) 1044
RseI CAYNNNNRTG 2 cut(s) 869, 960
SacII CCGCGG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 1164
SatI GCNGC 7 cut(s) 10, 78, 81, 142, 521, 927, 930
Sau3AI GATC 3 cut(s) 197, 946, 1012
ScaI AGTACT 1 cut(s) 1045
SchI GAGTC 7 cut(s) 269, 293, 396, 419, 452, 580, 880
ScrFI CCNGG 3 cut(s) 316, 580, 581
SduI GDGCHC 1 cut(s) 490
SfoI GGCGCC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 634
SgrBI CCGCGG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 94
SmaI CCCGGG 1 cut(s) 581
SmiMI CAYNNNNRTG 2 cut(s) 869, 960
SmlI CTYRAG 2 cut(s) 94, 780
SmoI CTYRAG 2 cut(s) 94, 780
SphI GCATGC 1 cut(s) 103
Sse9I AATT 2 cut(s) 906, 1168
SsiI CCGC 9 cut(s) 9, 26, 78, 80, 142, 605, 641, 939, 1145
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 2 cut(s) 207, 554
StyD4I CCNGG 3 cut(s) 314, 578, 579
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 3 cut(s) 110, 861, 953
TaiI ACGT 5 cut(s) 20, 74, 161, 396, 1129
TaqI TCGA 8 cut(s) 41, 95, 196, 221, 590, 869, 897, 1149
TaqII GACCGA 1 cut(s) 742
TasI AATT 2 cut(s) 906, 1168
TatI WGTACW 1 cut(s) 1043
TauI GCSGC 4 cut(s) 12, 80, 83, 144
TfiI GAWTC 4 cut(s) 290, 428, 716, 749
Tru1I TTAA 1 cut(s) 1164
Tru9I TTAA 1 cut(s) 1164
TscAI CASTG 2 cut(s) 747, 831
TseFI GTSAC 6 cut(s) 511, 563, 760, 855, 883, 953
TseI GCWGC 3 cut(s) 520, 926, 929
Tsp45I GTSAC 6 cut(s) 511, 563, 760, 855, 883, 953
TspDTI ATGAA 4 cut(s) 390, 990, 1017, 1137
TspGWI ACGGA 1 cut(s) 414
TspMI CCCGGG 1 cut(s) 579
TspRI CASTG 2 cut(s) 747, 831
XapI RAATTY 1 cut(s) 906
XceI RCATGY 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 579
XspI CTAG 2 cut(s) 207, 554
ZrmI AGTACT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.