Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

16521 .. 17026

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtccacatcagccgctgttgacgccctcttgagcatgctccaccgtcttccacccactctctccctccccactagccgcgcacagtcaaccacgtgtcctctgctcacctacaactccatccctccccaactcgctgactcggccaagtcgaaagcgctgtcactctttgaactacccagggagaagaaacaagcgagtttcccgaggaactggcctattgggtttgagcaaggagatgaagttgacgatgatgacatggacggactcggcgagtcgttttgtctaaacgagtcgtgttataccgagtctgctgggttgtccttggcttctctaagcgagttcagtcgtgctttggagaaagtagggttggaggtgattgatatgctttgtaggtcagtcgggtttgaaagtcctctagggaaggatgattggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

146

Amino Acids

15.92

Weight (kDa)

4.43

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	2 cut(s)	15, 79
AcoI	YGGCCR	1 cut(s)	144
AcvI	CACGTG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	24
AfeI	AGCGCT	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	173, 410
AjnI	CCWGG	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	2 cut(s)	144, 215
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	2 cut(s)	83, 160
AsuHPI	GGTGA	2 cut(s)	100, 388
AvaI	CYCGRG	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	181
BfaI	CTAG	2 cut(s)	75, 419
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	2 cut(s)	15, 79
BlsI	GCNGC	2 cut(s)	16, 80
Bme1390I	CCNGG	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	4 cut(s)	179, 180, 206, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	4 cut(s)	179, 180, 206, 324
BseGI	GGATG	2 cut(s)	120, 433
BseNI	ACTGG	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	146, 217
BsiHKCI	CYCGRG	1 cut(s)	205
BsnI	GGCC	2 cut(s)	146, 217
BsoBI	CYCGRG	1 cut(s)	205
BspACI	CCGC	2 cut(s)	15, 79
BspANI	GGCC	2 cut(s)	146, 217
BspFNI	CGCG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	179, 180, 206, 324
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	47, 87
BstACI	GRCGYC	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	2 cut(s)	120, 433
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	83, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 143
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	146, 217
BtsCI	GGATG	2 cut(s)	120, 433
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	2 cut(s)	83, 160
CseI	GACGC	1 cut(s)	32
CviAII	CATG	2 cut(s)	37, 259
CviJI	RGCY	5 cut(s)	14, 78, 146, 217, 329
CviKI_1	RGCY	5 cut(s)	14, 78, 146, 217, 329
DdeI	CTNAG	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	324
Eco47III	AGCGCT	1 cut(s)	159
Eco72I	CACGTG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	40, 262
FaiI	YATR	4 cut(s)	38, 260, 303, 386
FatI	CATG	2 cut(s)	36, 258
Fnu4HI	GCNGC	2 cut(s)	15, 79
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	15, 79
FspBI	CTAG	2 cut(s)	75, 419
GlaI	GCGC	2 cut(s)	82, 159
GluI	GCNGC	2 cut(s)	15, 79
GsaI	CCCAGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	146, 217
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	83, 160
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	40, 262
Hin6I	GCGC	2 cut(s)	81, 158
HinP1I	GCGC	2 cut(s)	81, 158
HincII	GTYRAC	3 cut(s)	22, 90, 247
HindII	GTYRAC	3 cut(s)	22, 90, 247
HinfI	GANTC	5 cut(s)	140, 267, 275, 293, 308
HphI	GGTGA	2 cut(s)	100, 388
Hpy166II	GTNNAC	4 cut(s)	6, 22, 90, 247
Hpy188III	TCNNGA	2 cut(s)	31, 205
Hpy8I	GTNNAC	4 cut(s)	6, 22, 90, 247
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	47, 87
HpyCH4IV	ACGT	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 143
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	40, 262
HspAI	GCGC	2 cut(s)	81, 158
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	166, 193, 199, 300
MaeI	CTAG	2 cut(s)	75, 419
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	41, 199
MlyI	GAGTC	5 cut(s)	134, 261, 284, 302, 317
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	38, 77, 111, 135, 201, 367, 426
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	23, 143
NlaIII	CATG	2 cut(s)	40, 262
NmeAIII	GCCGAG	2 cut(s)	122, 249
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	40
PaeI	GCATGC	1 cut(s)	40
PasI	CCCWGGG	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 270
PkrI	GCNGC	2 cut(s)	16, 80
PleI	GAGTC	5 cut(s)	134, 261, 283, 301, 316
PmaCI	CACGTG	1 cut(s)	96
PmlI	CACGTG	1 cut(s)	96
PpsI	GAGTC	5 cut(s)	134, 261, 283, 301, 316
Ppu21I	YACGTR	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	17
SatI	GCNGC	2 cut(s)	15, 79
SchI	GAGTC	5 cut(s)	134, 261, 284, 302, 317
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	4 cut(s)	98, 113, 378, 398
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	40
SsiI	CCGC	2 cut(s)	15, 79
SspMI	CTAG	2 cut(s)	75, 419
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	47, 87
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	152
TauI	GCSGC	2 cut(s)	17, 81
TseFI	GTSAC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	279
XceI	RCATGY	1 cut(s)	40
XspI	CTAG	2 cut(s)	75, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.