Rh1CG341300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005293
Physical Location & Seq
Forward (+)
61579643 .. 61582332
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG341300.1

Sequence Viewer

Length: 363 bp
ATGATGTGGGTGGCGGAGGGTTTATCGGGCATGAGTAAGACGCCGGTGGCGGGTCGGTTTTACCCGTATGTGGTAGGATTGCAGTATCAAATCAGGGGTGGCCAGAAGTATTCTTTGCTGGCGGATTCGGGTTGGGTCTCGGTGGTGCCACTGGTGGAATCGGTCTTGGTCACTATTGGTGACATTGCTCAAAGTATTAAGAGCCTTAATGATGCATCAACTTCACTAGGGCAGTTGAAGCTTGTGTTTGTTGGGGACAAAGAAAGCTCACATGCTAGGCCAGGAATTCTACCTGTATATATGGGAATTACGAAAAAAATAAATATTAAGTTTCTCCAAGCAGCACAACTTACTAGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

120

Amino Acids

13.0

Weight (kDa)

9.65

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 3 cut(s) 14, 50, 122
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 50, 70
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 2 cut(s) 241, 267
AluI AGCT 2 cut(s) 241, 267
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 2 cut(s) 100, 278
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 191
BalI TGGCCA 1 cut(s) 102
BanI GGYRCC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 3 cut(s) 227, 276, 354
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 202, 224
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 70
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 50, 70
BseMI GCAATG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 353
BshFI GGCC 2 cut(s) 102, 280
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 50, 70
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 2 cut(s) 102, 280
Bso31I GGTCTC 1 cut(s) 142
BspACI CCGC 3 cut(s) 14, 50, 122
BspANI GGCC 2 cut(s) 102, 280
BspLI GGNNCC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 353
BsuRI GGCC 2 cut(s) 102, 280
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 43
CseI GACGC 1 cut(s) 49
CviAII CATG 2 cut(s) 31, 272
CviJI RGCY 5 cut(s) 102, 204, 241, 267, 280
CviKI_1 RGCY 5 cut(s) 102, 204, 241, 267, 280
EaeI YGGCCR 1 cut(s) 100
EciI GGCGGA 2 cut(s) 29, 137
Eco31I GGTCTC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 280
EcoT22I ATGCAT 1 cut(s) 217
FaeI CATG 2 cut(s) 34, 275
FaiI YATR 7 cut(s) 32, 69, 273, 298, 300, 302, 361
FaqI GGGAC 1 cut(s) 269
FatI CATG 2 cut(s) 30, 271
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 3 cut(s) 227, 276, 354
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 102, 280
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 34, 275
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 125, 158
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 82, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 34, 275
LpnPI CCDG 8 cut(s) 57, 79, 104, 116, 137, 267, 294, 306
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 2 cut(s) 202, 224
MaeI CTAG 3 cut(s) 227, 276, 354
MaeIII GTNAC 2 cut(s) 169, 179
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 2 cut(s) 285, 306
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 1 cut(s) 10
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 217
MscI TGGCCA 1 cut(s) 102
MseI TTAA 3 cut(s) 198, 207, 327
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 238
NlaIII CATG 2 cut(s) 34, 275
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 169, 179
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 275
PfeI GAWTC 2 cut(s) 125, 158
PkrI GCNGC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 198, 207, 327
SatI GCNGC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 282
SetI ASST 3 cut(s) 243, 269, 295
SfaNI GCATC 2 cut(s) 202, 224
SgrAI CRCCGGYG 1 cut(s) 43
Sse9I AATT 2 cut(s) 285, 306
SsiI CCGC 3 cut(s) 14, 50, 122
SspI AATATT 1 cut(s) 325
SspMI CTAG 3 cut(s) 227, 276, 354
StyD4I CCNGG 1 cut(s) 280
TaqII GACCGA 1 cut(s) 151
TasI AATT 2 cut(s) 285, 306
TfiI GAWTC 2 cut(s) 125, 158
Tru1I TTAA 3 cut(s) 198, 207, 327
Tru9I TTAA 3 cut(s) 198, 207, 327
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 2 cut(s) 169, 179
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 2 cut(s) 169, 179
TspRI CASTG 1 cut(s) 156
XapI RAATTY 1 cut(s) 285
XceI RCATGY 1 cut(s) 275
XspI CTAG 3 cut(s) 227, 276, 354
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.