Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

16503322 .. 16503621

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCGTCGGCCCAACAGTCGGACAAAACCATGTCCACATCAGCTGCGGTGACGCCCTCTCGAGCATGCTCCACCGTCTTCCACCCATTCTTTCCCTCCCACTCATCGTGCACAGTCAGCCACGTGTCCTCCGATTCCGGTGATCTCTTTGTCCCAAGCTCGATCCAACCCGTATTCTCGAAACTCGGGTTCTTCCAGCTCACCGACAACTCCATCCCTCCTAACTCATTGACTCGGCCGAGTCGAAAGCGTTGTCGCTCTTTGACCTACCCAGGGAAAAGAAACAAGCGAGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.79

Weight (kDa)

10.3

Isoelectric Point (pI)

86.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	236
AcvI	CACGTG	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	19, 273
AflIII	ACRYGT	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	44, 159, 199
AluI	AGCT	3 cut(s)	44, 159, 199
Alw21I	GWGCWC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	2 cut(s)	60, 185
AoxI	GGCC	2 cut(s)	9, 236
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	61, 152, 193
AvaI	CYCGRG	2 cut(s)	60, 185
BaeGI	GKGCMC	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	273
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	2 cut(s)	60, 185
BmgT120I	GGNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	271, 272
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 273
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	271, 272
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	19, 273
BseSI	GKGCMC	1 cut(s)	113
BseX3I	CGGCCG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	11, 238
BsiEI	CGRYCG	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	2 cut(s)	60, 185
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	19, 273
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	11, 238
BsoBI	CYCGRG	2 cut(s)	60, 185
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	142, 162
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	2 cut(s)	11, 238
BspPI	GGATC	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	271, 272
BssMI	GATC	2 cut(s)	142, 162
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	18, 76, 115
BstACI	GRCGYC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	145, 165
BstMBI	GATC	2 cut(s)	142, 162
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	70
BstZI	CGGCCG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	11, 238
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	61
CviAII	CATG	2 cut(s)	31, 66
CviJI	RGCY	6 cut(s)	11, 44, 120, 159, 199, 238
CviKI_1	RGCY	6 cut(s)	11, 44, 120, 159, 199, 238
DpnI	GATC	2 cut(s)	144, 164
DpnII	GATC	2 cut(s)	142, 162
EaeI	YGGCCR	1 cut(s)	236
EagI	CGGCCG	1 cut(s)	236
EclXI	CGGCCG	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	124
Eco88I	CYCGRG	2 cut(s)	60, 185
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	34, 69
FaiI	YATR	2 cut(s)	32, 67
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	30, 65
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	11, 238
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	34, 69
HinfI	GANTC	3 cut(s)	134, 232, 241
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	3 cut(s)	61, 152, 193
Hpy166II	GTNNAC	2 cut(s)	36, 111
Hpy188I	TCNGA	2 cut(s)	22, 133
Hpy188III	TCNNGA	3 cut(s)	60, 178, 297
Hpy8I	GTNNAC	2 cut(s)	36, 111
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4III	ACNGT	3 cut(s)	18, 76, 115
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	34, 69
Kzo9I	GATC	2 cut(s)	142, 162
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	151, 209, 258, 285
Lsp1109I	GCAGC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	144, 164
MboI	GATC	2 cut(s)	142, 162
MboII	GAAGA	2 cut(s)	70, 184
MhlI	GDGCHC	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	226, 250
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	4 cut(s)	67, 106, 139, 228
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	2 cut(s)	142, 162
NlaIII	CATG	2 cut(s)	34, 69
NmeAIII	GCCGAG	2 cut(s)	214, 264
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	60
PasI	CCCWGGG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 241
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	2 cut(s)	226, 249
PmaCI	CACGTG	1 cut(s)	124
PmlI	CACGTG	1 cut(s)	124
PpsI	GAGTC	2 cut(s)	226, 249
Ppu21I	YACGTR	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	271
PspCI	CACGTG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	44
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	142, 162
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	2 cut(s)	226, 250
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	5 cut(s)	46, 126, 161, 201, 269
Sfr274I	CTCGAG	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SphI	GCATGC	1 cut(s)	69
SsiI	CCGC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	18, 76, 115
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	4 cut(s)	61, 161, 179, 244
TfiI	GAWTC	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.