MD01G1154300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0005293
Physical Location & Seq
Forward (+)
26243693 .. 26244285
593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1154300.v1.1.491

Sequence Viewer

Length: 276 bp
ATGCACGGCGGCGCCACCTCAGCACCACCCCCAACACCCTCCAACAACCTCTTGTCCACCTCAGATGCCGCGACAGCAGATGCCCTCTCGAGGCTCCTCCACCGTCTTCCTCCTACTCTCTCGTCCCTTCCCACACGCCGCTCACCTCCCAAGACGTGTCCACAATCGATCTCTTTCTCCGACGTCCAAGCCAACCCGACCCTCCTCTCCTGCGCTTCCCAACTCGGGTTCTTCCAGCTCACCAACCACCCTATCCCATCCCAACTCGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

92

Amino Acids

9.52

Weight (kDa)

8.94

Isoelectric Point (pI)

68.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 9, 69, 139
AcyI GRCGYC 2 cut(s) 12, 183
AfiI CCNNNNNNNGG 2 cut(s) 90, 225
AflIII ACRYGT 1 cut(s) 155
AjiI CACGTC 1 cut(s) 156
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Ama87I CYCGRG 2 cut(s) 88, 224
AspLEI GCGC 2 cut(s) 14, 215
AsuHPI GGTGA 2 cut(s) 135, 232
AvaI CYCGRG 2 cut(s) 88, 224
BanI GGYRCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 22
BfaI CTAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 3 cut(s) 10, 69, 139
BlsI GCNGC 3 cut(s) 11, 70, 140
BmeT110I CYCGRG 2 cut(s) 88, 224
BmgBI CACGTC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 13, 95
BmsI GCATC 2 cut(s) 55, 70
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 19
Bsa29I ATCGAT 1 cut(s) 167
BsaHI GRCGYC 2 cut(s) 12, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 225
BseCI ATCGAT 1 cut(s) 167
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 90, 225
BseMII CTCAG 2 cut(s) 33, 75
BseRI GAGGAG 2 cut(s) 86, 194
Bsh1236I CGCG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 88, 224
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 90, 225
BsmFI GGGAC 1 cut(s) 109
BsoBI CYCGRG 2 cut(s) 88, 224
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 3 cut(s) 9, 69, 139
BspCNI CTCAG 2 cut(s) 32, 74
BspDI ATCGAT 1 cut(s) 167
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 13, 95
BspT107I GGYRCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 141
BssMI GATC 1 cut(s) 168
BssNI GRCGYC 2 cut(s) 12, 183
Bst4CI ACNGT 1 cut(s) 104
BstACI GRCGYC 2 cut(s) 12, 183
BstDEI CTNAG 2 cut(s) 19, 61
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 215
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 20, 74
BstUI CGCG 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 167
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 257
CfoI GCGC 2 cut(s) 14, 215
ClaI ATCGAT 1 cut(s) 167
CviJI RGCY 3 cut(s) 94, 191, 238
CviKI_1 RGCY 3 cut(s) 94, 191, 238
DdeI CTNAG 2 cut(s) 19, 61
DinI GGCGCC 1 cut(s) 13
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eco88I CYCGRG 2 cut(s) 88, 224
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
FaqI GGGAC 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 10, 69, 139
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 3 cut(s) 10, 69, 139
FspBI CTAG 1 cut(s) 274
GlaI GCGC 2 cut(s) 13, 214
GluI GCNGC 3 cut(s) 10, 69, 139
HaeII RGCGCY 1 cut(s) 15
HhaI GCGC 2 cut(s) 14, 215
Hin1I GRCGYC 2 cut(s) 12, 183
Hin6I GCGC 2 cut(s) 12, 213
HinP1I GCGC 2 cut(s) 12, 213
HphI GGTGA 2 cut(s) 135, 232
Hpy166II GTNNAC 2 cut(s) 57, 161
Hpy188I TCNGA 2 cut(s) 64, 181
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 57, 161
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 2 cut(s) 155, 183
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 74
HpyF3I CTNAG 2 cut(s) 19, 61
HpySE526I ACGT 2 cut(s) 155, 183
Hsp92I GRCGYC 2 cut(s) 12, 183
HspAI GCGC 2 cut(s) 12, 213
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 2 cut(s) 223, 248
LweI GCATC 2 cut(s) 55, 70
MaeI CTAG 1 cut(s) 274
MaeII ACGT 2 cut(s) 155, 183
MalI GATC 1 cut(s) 170
MbiI CCGCTC 1 cut(s) 141
MboI GATC 1 cut(s) 168
MboII GAAGA 2 cut(s) 98, 223
Mly113I GGCGCC 1 cut(s) 12
MmeI TCCRAC 2 cut(s) 66, 204
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 20, 74
NarI GGCGCC 1 cut(s) 12
NdeII GATC 1 cut(s) 168
NlaIV GGNNCC 2 cut(s) 13, 95
PaeR7I CTCGAG 1 cut(s) 88
PkrI GCNGC 3 cut(s) 11, 70, 140
PluTI GGCGCC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 13, 95
SatI GCNGC 3 cut(s) 10, 69, 139
Sau3AI GATC 1 cut(s) 168
SetI ASST 7 cut(s) 20, 51, 62, 148, 158, 186, 240
SfaNI GCATC 2 cut(s) 55, 70
SfoI GGCGCC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SsiI CCGC 3 cut(s) 9, 69, 139
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 2 cut(s) 158, 186
TaqI TCGA 2 cut(s) 89, 167
TauI GCSGC 3 cut(s) 12, 71, 141
XhoI CTCGAG 1 cut(s) 88
XspI CTAG 1 cut(s) 274
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.