Rh1DG358500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005293
Physical Location & Seq
Forward (+)
58243313 .. 58243654
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG358500.1

Sequence Viewer

Length: 342 bp
ATGCACGGCGGCGCCACGTCAGCTCCGCCACCGACGCCATCGACCCAGCAGTCGGACAAACCCATGTCCACGTCAGCCGCGGCTGACGCCCTCTCGAGCATGCTCCACCGTCTTCCACCCACTCTCTCCCTCCCCACTCGCCGCGCACAGCCAGCCATGTGTCCTCCGGTTCCGGTGGTGTCTTTGTCCCAAGCTCGATCCAACCCTAGTCTCTTCTCCTCGAAACTCGGGTTCTTCCAGCTCACCGACCACTCCATCCCTCCCAACTCGCTGACTCGGCCGAGTCGGAAGCGCTGTCGCTCTTTGACCTATCCAGGGAGAAGAAAGAAGCGTGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

113

Amino Acids

12.24

Weight (kDa)

11.77

Isoelectric Point (pI)

81.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 11
AccII CGCG 2 cut(s) 80, 144
AciI CCGC 5 cut(s) 9, 26, 78, 80, 142
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 278
AcyI GRCGYC 3 cut(s) 12, 35, 87
AfeI AGCGCT 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 52, 315
AjiI CACGTC 2 cut(s) 18, 72
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 23, 194, 241
AluI AGCT 3 cut(s) 23, 194, 241
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 192
Ama87I CYCGRG 2 cut(s) 94, 227
Aor51HI AGCGCT 1 cut(s) 293
AoxI GGCC 1 cut(s) 278
AspLEI GCGC 3 cut(s) 14, 146, 294
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 2 cut(s) 94, 227
BanI GGYRCC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 2 cut(s) 46, 263
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 207
BfoI RGCGCY 2 cut(s) 15, 295
BisI GCNGC 4 cut(s) 10, 78, 81, 142
BlsI GCNGC 4 cut(s) 11, 79, 82, 143
Bme1390I CCNGG 1 cut(s) 315
BmeT110I CYCGRG 2 cut(s) 94, 227
BmgBI CACGTC 2 cut(s) 18, 72
BmiI GGNNCC 2 cut(s) 13, 171
BmrFI CCNGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 104
BsaHI GRCGYC 3 cut(s) 12, 35, 87
BsaJI CCNNGG 2 cut(s) 78, 314
BsaWI WCCGGW 2 cut(s) 166, 172
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 315
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 78, 314
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 52, 315
BseRI GAGGAG 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 80, 144
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 281
BsiHKCI CYCGRG 2 cut(s) 94, 227
BsiSI CCGG 2 cut(s) 167, 173
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 52, 315
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 2 cut(s) 94, 227
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 5 cut(s) 9, 26, 78, 80, 142
BspANI GGCC 1 cut(s) 280
BspFNI CGCG 2 cut(s) 80, 144
BspLI GGNNCC 2 cut(s) 13, 171
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 78, 314
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 3 cut(s) 12, 35, 87
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 3 cut(s) 12, 35, 87
BstC8I GCNNGC 2 cut(s) 101, 153
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 2 cut(s) 80, 144
BstH2I RGCGCY 2 cut(s) 15, 295
BstHHI GCGC 3 cut(s) 14, 146, 294
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 197
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 5 cut(s) 20, 34, 86, 152, 277
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 313
BstUI CGCG 2 cut(s) 80, 144
BstV2I GAAGAC 1 cut(s) 104
BstZI CGGCCG 1 cut(s) 278
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 78
BtrI CACGTC 2 cut(s) 18, 72
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 101, 153
CfoI GCGC 3 cut(s) 14, 146, 294
Cfr42I CCGCGG 1 cut(s) 81
CseI GACGC 2 cut(s) 43, 95
CviAII CATG 3 cut(s) 64, 100, 157
CviJI RGCY 8 cut(s) 23, 77, 83, 151, 155, 194, 241, 280
CviKI_1 RGCY 8 cut(s) 23, 77, 83, 151, 155, 194, 241, 280
DinI GGCGCC 1 cut(s) 13
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 278
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 293
Eco52I CGGCCG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 94, 227
EcoRII CCWGG 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
FaeI CATG 3 cut(s) 67, 103, 160
FaiI YATR 3 cut(s) 65, 101, 158
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 63, 99, 156
Fnu4HI GCNGC 4 cut(s) 10, 78, 81, 142
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 10, 78, 81, 142
FspBI CTAG 1 cut(s) 207
GlaI GCGC 3 cut(s) 13, 145, 293
GluI GCNGC 4 cut(s) 10, 78, 81, 142
GsaI CCCAGC 1 cut(s) 49
HaeII RGCGCY 2 cut(s) 15, 295
HaeIII GGCC 1 cut(s) 280
HapII CCGG 2 cut(s) 167, 173
HgaI GACGC 2 cut(s) 43, 95
HhaI GCGC 3 cut(s) 14, 146, 294
Hin1I GRCGYC 3 cut(s) 12, 35, 87
Hin1II CATG 3 cut(s) 67, 103, 160
Hin6I GCGC 3 cut(s) 12, 144, 292
HinP1I GCGC 3 cut(s) 12, 144, 292
HinfI GANTC 2 cut(s) 274, 283
HpaII CCGG 2 cut(s) 167, 173
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 55, 288, 341
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 2 cut(s) 17, 71
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 34, 86, 152, 277
HpySE526I ACGT 2 cut(s) 17, 71
Hsp92I GRCGYC 3 cut(s) 12, 35, 87
Hsp92II CATG 3 cut(s) 67, 103, 160
HspAI GCGC 3 cut(s) 12, 144, 292
KasI GGCGCC 1 cut(s) 11
KspI CCGCGG 1 cut(s) 81
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 28, 108
LpnPI CCDG 7 cut(s) 59, 165, 180, 186, 251, 300, 327
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 17, 71
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 4 cut(s) 104, 205, 226, 333
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 268, 292
MmeI TCCRAC 3 cut(s) 33, 225, 266
MnlI CCTC 5 cut(s) 101, 140, 174, 229, 270
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 167, 173
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 2 cut(s) 80, 144
MwoI GCNNNNNNNGC 5 cut(s) 20, 34, 86, 152, 277
NarI GGCGCC 1 cut(s) 12
NdeII GATC 1 cut(s) 197
NlaIII CATG 3 cut(s) 67, 103, 160
NlaIV GGNNCC 2 cut(s) 13, 171
NmeAIII GCCGAG 2 cut(s) 256, 306
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 94
PkrI GCNGC 4 cut(s) 11, 79, 82, 143
PleI GAGTC 2 cut(s) 268, 291
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 268, 291
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 13, 171
SacII CCGCGG 1 cut(s) 81
SatI GCNGC 4 cut(s) 10, 78, 81, 142
Sau3AI GATC 1 cut(s) 197
SchI GAGTC 2 cut(s) 268, 292
ScrFI CCNGG 1 cut(s) 315
SetI ASST 6 cut(s) 20, 25, 74, 196, 243, 311
SfoI GGCGCC 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 81
SgrBI CCGCGG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SphI GCATGC 1 cut(s) 103
SsiI CCGC 5 cut(s) 9, 26, 78, 80, 142
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 2 cut(s) 20, 74
TaqI TCGA 4 cut(s) 41, 95, 196, 221
TauI GCSGC 4 cut(s) 12, 80, 83, 144
XceI RCATGY 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 94
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.