Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

16409782 .. 16410135

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCAACATCAGTCGCGGCTGACACCCTCTCGAGCATGCTCCACCGTCTTCCACCCACTCTCTCCCTCCCCACTCGGCGCGCACAGTCAGCAGCGTGTCCTTCGGTTCCGGTGGTCTTTTTGTCCCAAGCTCAATCCAACCCTTCTCCTCGAAACTCGGGTTCTTCCAACTCACTGACAACTCCATCCCTCAGTAACTCGCTGACTTGGCCGAGTCGGAAGCGCTGTCGCTCTTTGACCTACCCAGGGAGAAGAAACAAGCGAGTTTCCCGAGGAACTGGCCTGTTAGATTTGAGGAAGGAGATGAAGTTGACGATGATGACGTGGACGGACTCGGCGAGTCGTTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

117

Amino Acids

12.82

Weight (kDa)

11.81

Isoelectric Point (pI)

72.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	17, 81
AciI	CCGC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	246
AjiI	CACGTC	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Ama87I	CYCGRG	3 cut(s)	31, 157, 270
Aor51HI	AGCGCT	1 cut(s)	224
AoxI	GGCC	2 cut(s)	209, 280
ApeKI	GCWGC	1 cut(s)	92
AspLEI	GCGC	3 cut(s)	81, 83, 225
AvaI	CYCGRG	3 cut(s)	31, 157, 270
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	2 cut(s)	18, 93
BlsI	GCNGC	2 cut(s)	19, 94
Bme1390I	CCNGG	1 cut(s)	246
BmeT110I	CYCGRG	3 cut(s)	31, 157, 270
BmgBI	CACGTC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	244, 245, 271
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	244, 245, 271
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	283
BsePI	GCGCGC	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	104
Bsh1236I	CGCG	2 cut(s)	17, 81
BshFI	GGCC	2 cut(s)	211, 282
BsiHKCI	CYCGRG	3 cut(s)	31, 157, 270
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	211, 282
BsoBI	CYCGRG	3 cut(s)	31, 157, 270
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	211, 282
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	2 cut(s)	17, 81
BspLI	GGNNCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	244, 245, 271
BssHII	GCGCGC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	47, 87
BstC8I	GCNNGC	2 cut(s)	38, 81
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	2 cut(s)	17, 81
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	3 cut(s)	81, 83, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 208
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	244
BstUI	CGCG	2 cut(s)	17, 81
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	211, 282
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	38, 81
CfoI	GCGC	3 cut(s)	81, 83, 225
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	4 cut(s)	20, 131, 211, 282
CviKI_1	RGCY	4 cut(s)	20, 131, 211, 282
DdeI	CTNAG	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	209
Eco47III	AGCGCT	1 cut(s)	224
Eco88I	CYCGRG	3 cut(s)	31, 157, 270
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	40
FaiI	YATR	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	18, 93
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	18, 93
GlaI	GCGC	3 cut(s)	80, 82, 224
GluI	GCNGC	2 cut(s)	18, 93
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	211, 282
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	3 cut(s)	81, 83, 225
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	3 cut(s)	79, 81, 223
HinP1I	GCGC	3 cut(s)	79, 81, 223
HincII	GTYRAC	2 cut(s)	6, 312
HindII	GTYRAC	2 cut(s)	6, 312
HinfI	GANTC	3 cut(s)	214, 332, 340
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	6, 312, 327
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	31, 270
Hpy8I	GTNNAC	3 cut(s)	6, 312, 327
HpyAV	CCTTC	3 cut(s)	111, 153, 292
HpyCH4III	ACNGT	2 cut(s)	47, 87
HpyCH4IV	ACGT	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 208
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	3 cut(s)	79, 81, 223
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	123, 231, 258, 264, 296
Lsp1109I	GCAGC	1 cut(s)	104
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	3 cut(s)	41, 156, 264
MlyI	GAGTC	3 cut(s)	223, 326, 349
MmeI	TCCRAC	3 cut(s)	162, 192, 197
MnlI	CCTC	6 cut(s)	38, 77, 159, 200, 266, 288
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	2 cut(s)	17, 81
MwoI	GCNNNNNNNGC	2 cut(s)	89, 208
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	3 cut(s)	55, 237, 314
NspI	RCATGY	1 cut(s)	40
PaeI	GCATGC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	31
PasI	CCCWGGG	1 cut(s)	245
PauI	GCGCGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 335
PkrI	GCNGC	2 cut(s)	19, 94
PleI	GAGTC	3 cut(s)	222, 326, 348
PpsI	GAGTC	3 cut(s)	222, 326, 348
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	108
PteI	GCGCGC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	18, 93
SchI	GAGTC	3 cut(s)	223, 326, 349
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	3 cut(s)	133, 242, 326
Sfr274I	CTCGAG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	40
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	47, 87
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	32, 151
TauI	GCSGC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	180
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.