Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

123574 .. 124076

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtcaacatcagtcgcggctgacaccctctcgagcatgctccaccgtcttccacccactctctccctccccactcggcgcgcacagtcagcagcgtgtccttcggttccggtggtctttttgtcccaagctcaatccaacccttctcctcgaaactcggcgttgtcgctctttgacctacccagggagaagaaacaagcgagtttcccgaggaactggcctgttagatttgaggaaggagatgaagttgacgatgatgacgtggacggactcggcgagtcgttttgtctaaacgagtcatgttataccgagtctgctgggttgtccttggcttctctaagcgatttcaatcgtgctttggagaaagtagggttggaggtgattgatctgctttgtaggtcagtcgggtttgaaagtcctctagggaaggatgattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

146

Amino Acids

15.91

Weight (kDa)

4.49

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	17, 81
AciI	CCGC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	349, 413
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Ama87I	CYCGRG	2 cut(s)	31, 208
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	81, 83
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	2 cut(s)	31, 208
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	184
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	2 cut(s)	18, 93
BlsI	GCNGC	2 cut(s)	19, 94
Bme1390I	CCNGG	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	31, 208
BmgBI	CACGTC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	182, 183, 209, 327
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	182, 183, 209, 327
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	221
BsePI	GCGCGC	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	2 cut(s)	17, 81
BshFI	GGCC	1 cut(s)	220
BsiHKCI	CYCGRG	2 cut(s)	31, 208
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	220
BsoBI	CYCGRG	2 cut(s)	31, 208
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	17, 81
BspLI	GGNNCC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	4 cut(s)	182, 183, 209, 327
BssHII	GCGCGC	1 cut(s)	79
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	47, 87
BstC8I	GCNNGC	2 cut(s)	38, 81
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	2 cut(s)	17, 81
BstHHI	GCGC	2 cut(s)	81, 83
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	17, 81
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	38, 81
CfoI	GCGC	2 cut(s)	81, 83
CviAII	CATG	2 cut(s)	37, 300
CviJI	RGCY	4 cut(s)	20, 131, 220, 332
CviKI_1	RGCY	4 cut(s)	20, 131, 220, 332
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	327
Eco88I	CYCGRG	2 cut(s)	31, 208
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	40, 303
FaiI	YATR	3 cut(s)	38, 301, 306
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	36, 299
Fnu4HI	GCNGC	2 cut(s)	18, 93
Fsp4HI	GCNGC	2 cut(s)	18, 93
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	80, 82
GluI	GCNGC	2 cut(s)	18, 93
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	2 cut(s)	81, 83
Hin1II	CATG	2 cut(s)	40, 303
Hin6I	GCGC	2 cut(s)	79, 81
HinP1I	GCGC	2 cut(s)	79, 81
HincII	GTYRAC	2 cut(s)	6, 250
HindII	GTYRAC	2 cut(s)	6, 250
HinfI	GANTC	4 cut(s)	270, 278, 296, 311
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	6, 250, 265
Hpy188III	TCNNGA	2 cut(s)	31, 208
Hpy8I	GTNNAC	3 cut(s)	6, 250, 265
HpyAV	CCTTC	4 cut(s)	111, 153, 230, 421
HpyCH4III	ACNGT	2 cut(s)	47, 87
HpyCH4IV	ACGT	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	40, 303
HspAI	GCGC	2 cut(s)	79, 81
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	123, 169, 196, 202, 234, 303
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	261
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	2 cut(s)	41, 202
MlyI	GAGTC	4 cut(s)	264, 287, 305, 320
MmeI	TCCRAC	2 cut(s)	162, 354
MnlI	CCTC	7 cut(s)	38, 77, 159, 204, 226, 370, 429
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	17, 81
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	2 cut(s)	40, 303
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	3 cut(s)	55, 137, 252
NspI	RCATGY	1 cut(s)	40
PaeI	GCATGC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	31
PasI	CCCWGGG	1 cut(s)	183
PauI	GCGCGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 273
PkrI	GCNGC	2 cut(s)	19, 94
PleI	GAGTC	4 cut(s)	264, 286, 304, 319
PpsI	GAGTC	4 cut(s)	264, 286, 304, 319
Psp6I	CCWGG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	108
PteI	GCGCGC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	18, 93
Sau3AI	GATC	1 cut(s)	385
SchI	GAGTC	4 cut(s)	264, 287, 305, 320
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	5 cut(s)	133, 180, 264, 381, 401
Sfr274I	CTCGAG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	40
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	47, 87
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	32, 151
TauI	GCSGC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	282
XceI	RCATGY	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	31
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.