Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

26244287 .. 26246398

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1154400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATGTGGATCTCTGAGGGCTTACCAGATAAGAAGTCGCAGACGGCGGGTCGGTTTTACCCGTATGTAGTCGGGTTACAGTACCAAATCCGAAGTAGTCAGACGTACTCCTTGCTGGCGGATTCCGGTTGGCTCTCGGTGTTACCGCAGGTGGATTCAATCATGGTTACCATTGGTGACATTGCTCAAGTATGGAGTAATGGGAAGTTGAAGAAAGTGAGAGGAAGGCCAGTGGCATGTTTGGGAAACGACTCCAAGCCATCAGGTCGCTGCATATCAATGTCGCTGTTGGTGACTCTTCCCATGGACAGTACATTGTCTCCTCTTCTTCAAATTGCAGCCATTGATGGAAATGACAGAGATGATGATAATGATATGCAGGATATCAAATCGACGGTAGATGTGGGGGTGGCGAAAGAGAAGCAGGAAGGTTCTTTAAGTCATTTTGTCTCGAAGACTATGCTTGGAGAGTGTATCATGAACGCCTATTTTTCAAAGATCCACTGGACAGATATCGTATCAAGAAACAATTTTAATTTAATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

183

Amino Acids

20.11

Weight (kDa)

6.08

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	139
AciI	CCGC	3 cut(s)	47, 119, 146
AclWI	GGATC	2 cut(s)	17, 493
AfaI	GTAC	3 cut(s)	83, 107, 313
AgsI	TTSAA	4 cut(s)	159, 211, 332, 495
AhdI	GACNNNNNGTC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	324, 454
AlwI	GGATC	2 cut(s)	17, 493
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	270, 338
AsuHPI	GGTGA	2 cut(s)	188, 304
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	257, 350
BccI	CCATC	2 cut(s)	268, 341
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	442, 476
BcoDI	GTCTC	2 cut(s)	324, 454
BfuAI	ACCTGC	1 cut(s)	139
BisI	GCNGC	2 cut(s)	271, 339
BlsI	GCNGC	2 cut(s)	272, 340
BmeRI	GACNNNNNGTC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bse1I	ACTGG	2 cut(s)	230, 509
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	303
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	230, 509
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	257, 350
BshFI	GGCC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	126
BsmAI	GTCTC	2 cut(s)	324, 454
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	9, 498
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	3 cut(s)	47, 119, 146
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	477
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	17, 493
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	230, 509
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	9, 498
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	3 cut(s)	81, 311, 397
Bst6I	CTCTTC	2 cut(s)	303, 330
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	303
BstEII	GGTNACC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	12, 501
BstMAI	GTCTC	2 cut(s)	324, 454
BstMBI	GATC	2 cut(s)	9, 498
BstNSI	RCATGY	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	257, 350
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	2 cut(s)	9, 498
BstYI	RGATCY	2 cut(s)	9, 498
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	237, 502
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	82, 106, 312
CviAII	CATG	4 cut(s)	163, 237, 304, 478
CviJI	RGCY	5 cut(s)	21, 133, 229, 259, 341
CviKI_1	RGCY	5 cut(s)	21, 133, 229, 259, 341
CviQI	GTAC	3 cut(s)	82, 106, 312
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	11, 500
DpnII	GATC	2 cut(s)	9, 498
DriI	GACNNNNNGTC	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	303, 330
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	2 cut(s)	303, 330
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	303
Eco32I	GATATC	2 cut(s)	385, 514
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRV	GATATC	2 cut(s)	385, 514
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	166, 240, 307, 481
FatI	CATG	4 cut(s)	162, 236, 303, 477
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	271, 339
Fsp4HI	GCNGC	2 cut(s)	271, 339
GluI	GCNGC	2 cut(s)	271, 339
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	4 cut(s)	166, 240, 307, 481
HinfI	GANTC	4 cut(s)	122, 155, 251, 295
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	188, 304
Hpy188I	TCNGA	3 cut(s)	16, 92, 102
Hpy188III	TCNNGA	3 cut(s)	451, 478, 522
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	219, 422
HpyCH4III	ACNGT	3 cut(s)	81, 311, 397
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	273, 338, 379
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	166, 240, 307, 481
Kzo9I	GATC	2 cut(s)	9, 498
LpnPI	CCDG	9 cut(s)	39, 101, 134, 139, 243, 249, 365, 410, 490
Lsp1109I	GCAGC	2 cut(s)	257, 350
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	5 cut(s)	75, 141, 166, 176, 292
MalI	GATC	2 cut(s)	11, 500
MboI	GATC	2 cut(s)	9, 498
MboII	GAAGA	5 cut(s)	223, 290, 317, 320, 466
MflI	RGATCY	2 cut(s)	9, 498
MluCI	AATT	4 cut(s)	333, 529, 535, 540
MlyI	GAGTC	2 cut(s)	245, 289
MnlI	CCTC	3 cut(s)	10, 215, 333
MseI	TTAA	3 cut(s)	437, 534, 539
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	9, 498
NlaIII	CATG	4 cut(s)	166, 240, 307, 481
NmuCI	GTSAC	2 cut(s)	176, 292
NspI	RCATGY	1 cut(s)	240
PagI	TCATGA	1 cut(s)	477
PaqCI	CACCTGC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	122, 155
PkrI	GCNGC	2 cut(s)	272, 340
PleI	GAGTC	2 cut(s)	245, 289
PpsI	GAGTC	2 cut(s)	245, 289
PspEI	GGTNACC	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	9, 498
RsaI	GTAC	3 cut(s)	83, 107, 313
RsaNI	GTAC	3 cut(s)	82, 106, 312
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	437, 534, 539
SatI	GCNGC	2 cut(s)	271, 339
Sau3AI	GATC	2 cut(s)	9, 498
SchI	GAGTC	2 cut(s)	245, 289
SetI	ASST	4 cut(s)	107, 153, 268, 433
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	4 cut(s)	333, 529, 535, 540
SsiI	CCGC	3 cut(s)	47, 119, 146
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	81, 311, 397
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	392, 452
TasI	AATT	4 cut(s)	333, 529, 535, 540
TatI	WGTACW	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	122, 155
Tru1I	TTAA	3 cut(s)	437, 534, 539
Tru9I	TTAA	3 cut(s)	437, 534, 539
TscAI	CASTG	2 cut(s)	237, 509
TseFI	GTSAC	2 cut(s)	176, 292
TseI	GCWGC	2 cut(s)	270, 338
Tsp45I	GTSAC	2 cut(s)	176, 292
TspDTI	ATGAA	2 cut(s)	494, 534
TspRI	CASTG	2 cut(s)	237, 509
XceI	RCATGY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.