Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

76862971 .. 76863354

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG541100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCGTCGGCCCAGCAGTCAGACAAAACCATGTCCACATTAGCCGCGGCTCACGCCCTCTCGAGCATGCTCCACCGTCTTCCACCCACCCTCTCCCTCCCCACTCACCGCACACAGTCAGCCACGTGTCCTCCGGTTCCGGTGATCTCTTTGTCCCAAGCTCGATCCAACCCTTCTCCTCGAAACTCAGGTTCTTCCAGCTCACCGACAACTCCATCCCTCCCCAACTTGCTAACTCGGCTGAGTTGGAAGCACTGTCGCTCTTTGACCTACCCAGGGAGAAGAAACAAGCGAGTTTCCCGAGGAACTGGCCTGTTGGGTTTGAGGAAGGAGATGAAGTTGACAATGATGACGTGGACGGACTCGGCAAGTCGTTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

127

Amino Acids

13.84

Weight (kDa)

11.87

Isoelectric Point (pI)

74.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	45, 47, 109
AclWI	GGATC	1 cut(s)	159
AcvI	CACGTG	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	161, 201
AluI	AGCT	2 cut(s)	161, 201
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	2 cut(s)	61, 300
AoxI	GGCC	2 cut(s)	9, 310
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	98, 154, 195
AvaI	CYCGRG	2 cut(s)	61, 300
BbrPI	CACGTG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	71
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	45, 48
BlsI	GCNGC	2 cut(s)	46, 49
Bme1390I	CCNGG	1 cut(s)	276
BmeT110I	CYCGRG	2 cut(s)	61, 300
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	45, 274, 275, 301
BsaWI	WCCGGW	2 cut(s)	133, 139
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	45, 274, 275, 301
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	201, 233
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	12
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	11, 312
BsiHKCI	CYCGRG	2 cut(s)	61, 300
BsiSI	CCGG	2 cut(s)	134, 140
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	11, 312
BsoBI	CYCGRG	2 cut(s)	61, 300
Bsp143I	GATC	2 cut(s)	144, 164
BspACI	CCGC	3 cut(s)	45, 47, 109
BspANI	GGCC	2 cut(s)	11, 312
BspCNI	CTCAG	2 cut(s)	200, 234
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	45, 274, 275, 301
BssMI	GATC	2 cut(s)	144, 164
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	77, 117, 257
BstBAI	YACGTR	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	187, 242
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	147, 167
BstMBI	GATC	2 cut(s)	144, 164
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 238
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	11, 312
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	10
Cfr42I	CCGCGG	1 cut(s)	48
CviAII	CATG	2 cut(s)	31, 67
CviJI	RGCY	8 cut(s)	11, 44, 50, 122, 161, 201, 241, 312
CviKI_1	RGCY	8 cut(s)	11, 44, 50, 122, 161, 201, 241, 312
DdeI	CTNAG	2 cut(s)	187, 242
DpnI	GATC	2 cut(s)	146, 166
DpnII	GATC	2 cut(s)	144, 164
Eco72I	CACGTG	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	61, 300
EcoRII	CCWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	34, 70
FaiI	YATR	2 cut(s)	32, 68
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	30, 66
Fnu4HI	GCNGC	2 cut(s)	45, 48
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	45, 48
GluI	GCNGC	2 cut(s)	45, 48
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	11, 312
HapII	CCGG	2 cut(s)	134, 140
Hin1II	CATG	2 cut(s)	34, 70
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	2 cut(s)	134, 140
HphI	GGTGA	3 cut(s)	98, 154, 195
Hpy166II	GTNNAC	3 cut(s)	36, 342, 357
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	61, 300
Hpy8I	GTNNAC	3 cut(s)	36, 342, 357
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	183, 322
HpyCH4III	ACNGT	3 cut(s)	77, 117, 257
HpyCH4IV	ACGT	2 cut(s)	125, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 238
HpyF3I	CTNAG	2 cut(s)	187, 242
HpySE526I	ACGT	2 cut(s)	125, 353
Hsp92II	CATG	2 cut(s)	34, 70
KspI	CCGCGG	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	144, 164
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	9 cut(s)	26, 147, 153, 174, 211, 261, 288, 294, 326
MaeII	ACGT	2 cut(s)	125, 353
MalI	GATC	2 cut(s)	146, 166
MboI	GATC	2 cut(s)	144, 164
MboII	GAAGA	3 cut(s)	71, 186, 294
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	192, 227
MnlI	CCTC	8 cut(s)	68, 101, 107, 141, 189, 230, 296, 318
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	134, 140
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	53, 238
NdeII	GATC	2 cut(s)	144, 164
NlaIII	CATG	2 cut(s)	34, 70
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	2 cut(s)	217, 344
NspI	RCATGY	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	46, 49
PleI	GAGTC	1 cut(s)	356
PmaCI	CACGTG	1 cut(s)	126
PmlI	CACGTG	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	274
PspCI	CACGTG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	48
SatI	GCNGC	2 cut(s)	45, 48
Sau3AI	GATC	2 cut(s)	144, 164
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	6 cut(s)	128, 163, 193, 203, 272, 356
Sfr274I	CTCGAG	1 cut(s)	61
Sfr303I	CCGCGG	1 cut(s)	48
SgrBI	CCGCGG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SphI	GCATGC	1 cut(s)	70
SsiI	CCGC	3 cut(s)	45, 47, 109
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	3 cut(s)	77, 117, 257
TaiI	ACGT	2 cut(s)	128, 356
TaqI	TCGA	3 cut(s)	62, 163, 181
TauI	GCSGC	2 cut(s)	47, 50
TscAI	CASTG	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	260
XceI	RCATGY	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.