Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012160.1

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Reverse (-)

8566 .. 10664

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012160.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgatcacgggcaaaaaccaaaccttcgactccagtttggtggccggagaaggccggaatcggaaaatatcggcgttgaccacttccggctcaaggacccgatgcgtcattttccggccaagccgccttggggaggttgggtcagcttcgcaaccgcccccgtcggcccaacagtctgacaaaaccatgtccacatcagccgctgttgacgccctctcgagcatgctccaccttcttccacccactctctccctccccactcgctgcgcacagtcaaccacgtgtcctctggttccgctcacctacaactccatccctccccaactcactgacccggccgagtcgaaagcgttgtcactctttgaactacccagggagaataaacaagcaagtttcccgaggaactggcctgttaggtttgagcaaggagatgaagttgacgatgatgacgtggacggactcggcgagtcgttttgtctaaacgagtcgtgttataccgagtctgctgggttgtccttggcttctctaagcgagttcagtcgtgctttggagagagtagggttggaggtgattgatatgctttgtagatgccaaaatccagtcactagtccagtagctggattcgggattccggtcaccggtcgcctgagtccgtcaccgaagtccccgcccgccactggtcaccagagtcctgcaaggtctccgatgacttctctcattaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

241

Amino Acids

25.71

Weight (kDa)

5.76

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	298
AciI	CCGC	6 cut(s)	124, 155, 201, 296, 668, 672
AcoI	YGGCCR	3 cut(s)	42, 116, 336
AcvI	CACGTG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	6 cut(s)	93, 130, 133, 617, 638, 677
AflIII	ACRYGT	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	605
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	146, 617
AluI	AGCT	2 cut(s)	146, 617
Alw26I	GTCTC	1 cut(s)	705
AlwNI	CAGNNNCTG	2 cut(s)	203, 617
Ama87I	CYCGRG	2 cut(s)	217, 397
AoxI	GGCC	6 cut(s)	42, 52, 116, 165, 336, 407
ApeKI	GCWGC	1 cut(s)	264
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsiGI	ACCGGT	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	96, 166
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	292, 580, 628, 648, 674
AvaI	CYCGRG	2 cut(s)	217, 397
AvaII	GGWCC	1 cut(s)	96
BbrPI	CACGTG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	373
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	705
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	1 cut(s)	606
BisI	GCNGC	3 cut(s)	124, 201, 265
BlsI	GCNGC	3 cut(s)	125, 202, 266
Bme1390I	CCNGG	2 cut(s)	335, 373
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	2 cut(s)	217, 397
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	96, 166
BmiI	GGNNCC	2 cut(s)	98, 294
BmrFI	CCNGG	2 cut(s)	335, 373
BmsI	GCATC	2 cut(s)	92, 578
BpmI	CTGGAG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	705
BsaJI	CCNNGG	5 cut(s)	127, 371, 372, 398, 516
BsaWI	WCCGGW	2 cut(s)	631, 638
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 420, 450
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 130, 133, 617, 638, 677
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	5 cut(s)	33, 410, 599, 611, 682
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	5 cut(s)	127, 371, 372, 398, 516
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	6 cut(s)	93, 130, 133, 617, 638, 677
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	5 cut(s)	33, 410, 599, 611, 682
BseX3I	CGGCCG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	251
BseYI	CCCAGC	1 cut(s)	506
Bsh1285I	CGRYCG	2 cut(s)	339, 643
BshFI	GGCC	6 cut(s)	44, 54, 118, 167, 338, 409
BshTI	ACCGGT	1 cut(s)	638
BsiEI	CGRYCG	2 cut(s)	339, 643
BsiHKCI	CYCGRG	2 cut(s)	217, 397
BsiSI	CCGG	7 cut(s)	45, 55, 87, 115, 335, 632, 639
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	6 cut(s)	93, 130, 133, 617, 638, 677
BsmAI	GTCTC	1 cut(s)	705
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	6 cut(s)	44, 54, 118, 167, 338, 409
Bso31I	GGTCTC	1 cut(s)	705
BsoBI	CYCGRG	2 cut(s)	217, 397
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	6 cut(s)	124, 155, 201, 296, 668, 672
BspANI	GGCC	6 cut(s)	44, 54, 118, 167, 338, 409
BspCNI	CTCAG	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	98, 294
BspTNI	GGTCTC	1 cut(s)	705
BsrBI	CCGCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	5 cut(s)	33, 410, 599, 611, 682
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	5 cut(s)	127, 371, 372, 398, 516
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	127, 516
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	174, 273
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	224, 672
BstDEI	CTNAG	2 cut(s)	527, 647
BstEII	GGTNACC	2 cut(s)	634, 680
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	705
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	2 cut(s)	339, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	226
BstPI	GGTNACC	2 cut(s)	634, 680
BstSCI	CCNGG	2 cut(s)	333, 371
BstV1I	GCAGC	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	336
BsuRI	GGCC	6 cut(s)	44, 54, 118, 167, 338, 409
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	327, 675
Cac8I	GCNNGC	2 cut(s)	224, 672
CaiI	CAGNNNCTG	2 cut(s)	203, 617
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	2 cut(s)	96, 166
CseI	GACGC	2 cut(s)	94, 218
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	2 cut(s)	187, 223
DdeI	CTNAG	2 cut(s)	527, 647
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	3 cut(s)	42, 116, 336
EagI	CGGCCG	1 cut(s)	336
EclXI	CGGCCG	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	127, 516
Eco31I	GGTCTC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	336
Eco72I	CACGTG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	217, 397
Eco91I	GGTNACC	2 cut(s)	634, 680
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	96
EcoO65I	GGTNACC	2 cut(s)	634, 680
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	127, 516
ErhI	CCWWGG	2 cut(s)	127, 516
FaeI	CATG	2 cut(s)	190, 226
FaiI	YATR	4 cut(s)	188, 224, 495, 578
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	2 cut(s)	186, 222
FauI	CCCGC	2 cut(s)	675, 679
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	124, 201, 265
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	3 cut(s)	124, 201, 265
FspBI	CTAG	1 cut(s)	606
FspI	TGCGCA	1 cut(s)	268
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	124, 201, 265
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	6 cut(s)	44, 54, 118, 167, 338, 409
HapII	CCGG	7 cut(s)	45, 55, 87, 115, 335, 632, 639
HgaI	GACGC	2 cut(s)	94, 218
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	190, 226
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	4 cut(s)	78, 208, 276, 439
HindII	GTYRAC	4 cut(s)	78, 208, 276, 439
HpaII	CCGG	7 cut(s)	45, 55, 87, 115, 335, 632, 639
HphI	GGTGA	5 cut(s)	292, 580, 628, 648, 674
Hpy166II	GTNNAC	6 cut(s)	78, 192, 208, 276, 439, 454
Hpy188I	TCNGA	3 cut(s)	63, 178, 705
Hpy188III	TCNNGA	3 cut(s)	217, 397, 625
Hpy8I	GTNNAC	6 cut(s)	78, 192, 208, 276, 439, 454
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	34, 44, 242
HpyCH4III	ACNGT	2 cut(s)	174, 273
HpyCH4IV	ACGT	2 cut(s)	281, 450
HpyCH4V	TGCA	1 cut(s)	695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	527, 647
HpySE526I	ACGT	2 cut(s)	281, 450
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	190, 226
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	2 cut(s)	92, 578
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	2 cut(s)	281, 450
MaeIII	GTNAC	5 cut(s)	354, 601, 634, 654, 680
MalI	GATC	1 cut(s)	5
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	227
MlyI	GAGTC	8 cut(s)	23, 350, 453, 476, 494, 509, 658, 697
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	7 cut(s)	127, 224, 263, 297, 327, 393, 559
MseI	TTAA	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	7 cut(s)	45, 55, 87, 115, 335, 632, 639
MspR9I	CCNGG	2 cut(s)	335, 373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	190, 226
NlaIV	GGNNCC	2 cut(s)	98, 294
NmeAIII	GCCGAG	2 cut(s)	364, 441
NmuCI	GTSAC	5 cut(s)	354, 601, 634, 654, 680
NsbI	TGCGCA	1 cut(s)	268
NspI	RCATGY	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	217
PasI	CCCWGGG	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	2 cut(s)	447, 462
PfeI	GAWTC	3 cut(s)	58, 621, 628
PflMI	CCANNNNNTGG	1 cut(s)	617
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	125, 202, 266
PleI	GAGTC	8 cut(s)	23, 349, 453, 475, 493, 508, 657, 696
PmaCI	CACGTG	1 cut(s)	282
PmlI	CACGTG	1 cut(s)	282
PpsI	GAGTC	8 cut(s)	23, 349, 453, 475, 493, 508, 657, 696
Ppu21I	YACGTR	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	371
PspCI	CACGTG	1 cut(s)	282
PspEI	GGTNACC	2 cut(s)	634, 680
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	98, 294
PspPI	GGNCC	2 cut(s)	96, 166
PspPPI	RGGWCCY	1 cut(s)	96
PstNI	CAGNNNCTG	2 cut(s)	203, 617
SaqAI	TTAA	1 cut(s)	720
SatI	GCNGC	3 cut(s)	124, 201, 265
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	96, 166
SchI	GAGTC	8 cut(s)	23, 350, 453, 476, 494, 509, 658, 697
ScrFI	CCNGG	2 cut(s)	335, 373
SfaNI	GCATC	2 cut(s)	92, 578
Sfr274I	CTCGAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	91, 217
SmoI	CTYRAG	2 cut(s)	91, 217
SpeI	ACTAGT	1 cut(s)	605
SphI	GCATGC	1 cut(s)	226
SsiI	CCGC	6 cut(s)	124, 155, 201, 296, 668, 672
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	333, 371
StyI	CCWWGG	2 cut(s)	127, 516
TaaI	ACNGT	2 cut(s)	174, 273
TaiI	ACGT	2 cut(s)	284, 453
TaqI	TCGA	3 cut(s)	27, 218, 344
TauI	GCSGC	2 cut(s)	126, 203
TfiI	GAWTC	3 cut(s)	58, 621, 628
Tru1I	TTAA	1 cut(s)	720
Tru9I	TTAA	1 cut(s)	720
TscAI	CASTG	2 cut(s)	334, 682
TseFI	GTSAC	5 cut(s)	354, 601, 634, 654, 680
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	5 cut(s)	354, 601, 634, 654, 680
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	2 cut(s)	471, 642
TspRI	CASTG	2 cut(s)	334, 682
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	131
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	217
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.