Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005293

Physical Location & Seq

Genomic Coordinates Forward (+)

58243903 .. 58250795

Gene Structure 6893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG358600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATGTGGGTGGCGGAGGGTTTATCGGGCATGAGTAAGACGCCGGTGGCGGGTCGGTTTTACCCGTATGTGGTAGGATTGCAGTATCAAATCAGGGGTGGCCAGAAGTATTCTTTGCTGGCGGATTCGGGTTGGGTCTCGGTGGTGCCACTGGTGGAATCGGTCTTGGTCACTATTGGTGACATTGCTCAAAGTATTAAGAGCCTTAATGATGCATCAACTTCACTAGGGCAGTTGAAGCTTGTGTTTGTTGGGGACAAAGAAAGCTCACATGCTAGGCCAGGAATTCTACCTGATTATAATGCTACGGTGGAGTTCTACTGGGCACCATTTCTGGTGGAGTCAAATTCAGATGATCCATTGATGCACAGCATACAAAACCGTATAATCATGCCCAAATCGATTAAGAAGCATGGTAAAAATTGGATAGGTGTGGACTACCTCATTTTCAACACATACATATGGTGGATGAACACTTTCAACATGAAAGTTCTACGAGGATCGTTCGATCAAGGAGCAACGGAGTACGATGAGATCGACCGGCCGTTGGCTTACCGGAAAGTTATGACAACATGGGCGAAATGGGTGGACAAAAATATTGACCCCAATCGTACCACTGTCTTCTTCACCAGCATGTCTCCTCTCCACATCAAGAGCTTGGATTGGGACAACCCAGATGGCATAAAATGTGCCAAAGAGACCACTCCAATCCTGAACAGAACGACACCGTTGGAAGTGGGCACAGACAGAAGGCTCTTTGTGGTTTCAAGCGACATAGTGAAAGCAATGAAAGTGCCTGTTTACTTTCTCAACATTACTACTCTATCAGAGTTTCGTAAAGATGCACATACCTCGGTCCATACCATCAGGCAAGGCAAGATGTTGACGCCGGAGCAGCAAGCTGACCCGGAGAATTACGCCGATTGCATCCACTGGTGCCTCCCCGGGCTGCCGGACACATGGAACGAGTTTCTTTACACGCGTATCATCTCGCGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:0080090 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990538 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

333

Amino Acids

37.92

Weight (kDa)

7.05

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	93 - 327	9e-69	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11150 AT3G11150
fragaria_vesca	FvH4_7g24610
malus_domestica	MD01G1154300.v1.1 MD01G1154400.v1.1
prunus_persica	Prupe.2G251400_v2.0.a1 Prupe.2G251400_v2.0.a1
pyrus_communis	pycom01g17160
rosa_chinensis	RchiOBHm_Chr1g0370441
rosa_laevigata	RLG00000018784 RLG00000027041
rosa_multiflora	Rmu_co8352109.1_g000001 Rmu_sc0001290.1_g000003 Rmu_sc0005656.1_g000013 Rmu_sc0006266.1_g000035 Rmu_sc0012160.1_g000003
rosa_roxburghii	Rroxscaffold_2G00108140 Rroxscaffold_4G00286560
rosa_rugosa	Rorug01G0356800 Rorug02G0222100
rosa_samantha	Rh1AG365200 Rh1BG328200 Rh1CG341300 Rh1DG358500 Rh1DG358600 Rh2AG541100 Rh2CG179900 Rh7DG178400
rosa_wichuraiana	Rw1G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	3 cut(s)	145, 325, 936
AccII	CGCG	2 cut(s)	982, 994
AciI	CCGC	4 cut(s)	14, 50, 122, 994
AclWI	GGATC	2 cut(s)	350, 508
AcoI	YGGCCR	2 cut(s)	100, 542
AcsI	RAATTY	2 cut(s)	285, 346
AcyI	GRCGYC	2 cut(s)	41, 887
AfaI	GTAC	2 cut(s)	527, 613
AfiI	CCNNNNNNNGG	3 cut(s)	50, 70, 547
AflIII	ACRYGT	1 cut(s)	980
AgsI	TTSAA	4 cut(s)	238, 451, 481, 768
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	4 cut(s)	241, 267, 657, 902
AluI	AGCT	4 cut(s)	241, 267, 657, 902
Alw26I	GTCTC	3 cut(s)	142, 642, 692
AlwI	GGATC	2 cut(s)	350, 508
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	3 cut(s)	100, 278, 542
ApeKI	GCWGC	2 cut(s)	895, 949
ApoI	RAATTY	2 cut(s)	285, 346
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	856
AsuC2I	CCSGG	3 cut(s)	908, 945, 946
AsuHPI	GGTGA	2 cut(s)	191, 619
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	1 cut(s)	856
BaeGI	GKGCMC	2 cut(s)	328, 743
BaeI	ACNNNNGTAYC	2 cut(s)	967, 1000
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	3 cut(s)	145, 325, 936
BbsI	GAAGAC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	907, 936
BccI	CCATC	2 cut(s)	671, 872
BceAI	ACGGC	1 cut(s)	529
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	3 cut(s)	908, 945, 946
BcoDI	GTCTC	3 cut(s)	142, 642, 692
BfaI	CTAG	2 cut(s)	227, 276
BisI	GCNGC	2 cut(s)	896, 950
BlsI	GCNGC	2 cut(s)	897, 951
Bme1390I	CCNGG	4 cut(s)	282, 908, 945, 946
Bme18I	GGWCC	1 cut(s)	856
BmeT110I	CYCGRG	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	856
BmiI	GGNNCC	3 cut(s)	147, 327, 938
BmrFI	CCNGG	4 cut(s)	282, 908, 945, 946
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	5 cut(s)	202, 224, 354, 832, 936
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	613
BpuMI	CCSGG	3 cut(s)	908, 945, 946
Bsa29I	ATCGAT	1 cut(s)	401
BsaHI	GRCGYC	2 cut(s)	41, 887
BsaI	GGTCTC	2 cut(s)	142, 692
BsaJI	CCNNGG	3 cut(s)	852, 943, 944
BsaWI	WCCGGW	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 70, 547
Bse118I	RCCGGY	2 cut(s)	43, 540
Bse1I	ACTGG	3 cut(s)	156, 326, 938
Bse3DI	GCAATG	2 cut(s)	183, 792
BseBI	CCWGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	852, 943, 944
BseGI	GGATG	2 cut(s)	474, 927
BseLI	CCNNNNNNNGG	3 cut(s)	50, 70, 547
BseMI	GCAATG	2 cut(s)	183, 792
BseNI	ACTGG	3 cut(s)	156, 326, 938
BseRI	GAGGAG	1 cut(s)	630
BseSI	GKGCMC	2 cut(s)	328, 743
BseX3I	CGGCCG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	907, 936
Bsh1236I	CGCG	2 cut(s)	982, 994
Bsh1285I	CGRYCG	2 cut(s)	541, 545
BshFI	GGCC	3 cut(s)	102, 280, 544
BshNI	GGYRCC	3 cut(s)	145, 325, 936
BshVI	ATCGAT	1 cut(s)	401
BsiEI	CGRYCG	2 cut(s)	541, 545
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	7 cut(s)	44, 541, 556, 890, 908, 945, 953
BslFI	GGGAC	2 cut(s)	269, 680
BslI	CCNNNNNNNGG	3 cut(s)	50, 70, 547
BsmAI	GTCTC	3 cut(s)	142, 642, 692
BsmFI	GGGAC	2 cut(s)	269, 680
BsnI	GGCC	3 cut(s)	102, 280, 544
Bso31I	GGTCTC	2 cut(s)	142, 692
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	2 cut(s)	328, 743
Bsp143I	GATC	4 cut(s)	355, 500, 508, 534
BspACI	CCGC	4 cut(s)	14, 50, 122, 994
BspANI	GGCC	3 cut(s)	102, 280, 544
BspDI	ATCGAT	1 cut(s)	401
BspFNI	CGCG	2 cut(s)	982, 994
BspLI	GGNNCC	3 cut(s)	147, 327, 938
BspPI	GGATC	2 cut(s)	350, 508
BspT107I	GGYRCC	3 cut(s)	145, 325, 936
BspTNI	GGTCTC	2 cut(s)	142, 692
BsrDI	GCAATG	2 cut(s)	183, 792
BsrFI	RCCGGY	2 cut(s)	43, 540
BsrI	ACTGG	3 cut(s)	156, 326, 938
BssAI	RCCGGY	2 cut(s)	43, 540
BssECI	CCNNGG	3 cut(s)	852, 943, 944
BssMI	GATC	4 cut(s)	355, 500, 508, 534
BssNI	GRCGYC	2 cut(s)	41, 887
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	310, 383, 619, 729
BstACI	GRCGYC	2 cut(s)	41, 887
BstC8I	GCNNGC	2 cut(s)	120, 900
BstF5I	GGATG	2 cut(s)	474, 927
BstFNI	CGCG	2 cut(s)	982, 994
BstKTI	GATC	4 cut(s)	358, 503, 511, 537
BstMAI	GTCTC	3 cut(s)	142, 642, 692
BstMBI	GATC	4 cut(s)	355, 500, 508, 534
BstMCI	CGRYCG	2 cut(s)	541, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 895
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	2 cut(s)	275, 637
BstSCI	CCNGG	4 cut(s)	280, 906, 943, 944
BstSLI	GKGCMC	2 cut(s)	328, 743
BstUI	CGCG	2 cut(s)	982, 994
BstV1I	GCAGC	2 cut(s)	907, 936
BstV2I	GAAGAC	1 cut(s)	613
BstZI	CGGCCG	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	102, 280, 544
BsuTUI	ATCGAT	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	474, 927
BtsIMutI	CAGTG	3 cut(s)	149, 615, 931
Cac8I	GCNNGC	2 cut(s)	120, 900
Cfr10I	RCCGGY	2 cut(s)	43, 540
Cfr13I	GGNCC	1 cut(s)	856
Cfr9I	CCCGGG	1 cut(s)	944
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	2 cut(s)	49, 895
Csp6I	GTAC	2 cut(s)	526, 612
CviAII	CATG	8 cut(s)	31, 272, 391, 413, 484, 573, 634, 960
CviQI	GTAC	2 cut(s)	526, 612
DpnI	GATC	4 cut(s)	357, 502, 510, 536
DpnII	GATC	4 cut(s)	355, 500, 508, 534
EaeI	YGGCCR	2 cut(s)	100, 542
EagI	CGGCCG	1 cut(s)	542
EciI	GGCGGA	2 cut(s)	29, 137
EclXI	CGGCCG	1 cut(s)	542
Eco31I	GGTCTC	2 cut(s)	142, 692
Eco47I	GGWCC	1 cut(s)	856
Eco52I	CGGCCG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	8 cut(s)	34, 275, 394, 416, 487, 576, 637, 963
FaqI	GGGAC	2 cut(s)	269, 680
FatI	CATG	8 cut(s)	30, 271, 390, 412, 483, 572, 633, 959
FauI	CCCGC	1 cut(s)	43
FauNDI	CATATG	1 cut(s)	461
Fnu4HI	GCNGC	2 cut(s)	896, 950
FokI	GGATG	2 cut(s)	481, 914
Fsp4HI	GCNGC	2 cut(s)	896, 950
FspBI	CTAG	2 cut(s)	227, 276
GluI	GCNGC	2 cut(s)	896, 950
HaeIII	GGCC	3 cut(s)	102, 280, 544
HapII	CCGG	7 cut(s)	44, 541, 556, 890, 908, 945, 953
HgaI	GACGC	2 cut(s)	49, 895
Hin1I	GRCGYC	2 cut(s)	41, 887
Hin1II	CATG	8 cut(s)	34, 275, 394, 416, 487, 576, 637, 963
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	3 cut(s)	125, 158, 341
HpaII	CCGG	7 cut(s)	44, 541, 556, 890, 908, 945, 953
HphI	GGTGA	2 cut(s)	191, 619
Hpy166II	GTNNAC	4 cut(s)	436, 589, 802, 885
Hpy188I	TCNGA	2 cut(s)	352, 829
Hpy188III	TCNNGA	3 cut(s)	652, 712, 999
Hpy8I	GTNNAC	4 cut(s)	436, 589, 802, 885
HpyAV	CCTTC	1 cut(s)	744
HpyCH4III	ACNGT	4 cut(s)	310, 383, 619, 729
HpyCH4V	TGCA	5 cut(s)	82, 215, 367, 845, 927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 895
Hsp92I	GRCGYC	2 cut(s)	41, 887
Hsp92II	CATG	8 cut(s)	34, 275, 394, 416, 487, 576, 637, 963
Kzo9I	GATC	4 cut(s)	355, 500, 508, 534
LmnI	GCTCC	2 cut(s)	515, 892
Lsp1109I	GCAGC	2 cut(s)	907, 936
LweI	GCATC	5 cut(s)	202, 224, 354, 832, 936
MaeI	CTAG	2 cut(s)	227, 276
MaeIII	GTNAC	2 cut(s)	169, 179
MalI	GATC	4 cut(s)	357, 502, 510, 536
MboI	GATC	4 cut(s)	355, 500, 508, 534
MboII	GAAGA	2 cut(s)	613, 616
MhlI	GDGCHC	2 cut(s)	328, 743
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	285, 346, 421, 913
MluI	ACGCGT	1 cut(s)	980
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	711
MnlI	CCTC	6 cut(s)	10, 452, 491, 651, 862, 950
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	198, 207, 405
MslI	CAYNNNNRTG	2 cut(s)	460, 632
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	7 cut(s)	44, 541, 556, 890, 908, 945, 953
MspR9I	CCNGG	4 cut(s)	282, 908, 945, 946
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	2 cut(s)	982, 994
MwoI	GCNNNNNNNGC	2 cut(s)	238, 895
NciI	CCSGG	3 cut(s)	908, 945, 946
NdeI	CATATG	1 cut(s)	461
NdeII	GATC	4 cut(s)	355, 500, 508, 534
NlaIII	CATG	8 cut(s)	34, 275, 394, 416, 487, 576, 637, 963
NlaIV	GGNNCC	3 cut(s)	147, 327, 938
NmuCI	GTSAC	2 cut(s)	169, 179
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	2 cut(s)	275, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	125, 158
PkrI	GCNGC	2 cut(s)	897, 951
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	147, 327, 938
PspPI	GGNCC	1 cut(s)	856
RsaI	GTAC	2 cut(s)	527, 613
RsaNI	GTAC	2 cut(s)	526, 612
RseI	CAYNNNNRTG	2 cut(s)	460, 632
SaqAI	TTAA	3 cut(s)	198, 207, 405
SatI	GCNGC	2 cut(s)	896, 950
Sau3AI	GATC	4 cut(s)	355, 500, 508, 534
Sau96I	GGNCC	1 cut(s)	856
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	282, 908, 945, 946
SduI	GDGCHC	2 cut(s)	328, 743
SetI	ASST	8 cut(s)	243, 269, 295, 433, 444, 659, 854, 904
SfaNI	GCATC	5 cut(s)	202, 224, 354, 832, 936
SgrAI	CRCCGGYG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	856
SmaI	CCCGGG	1 cut(s)	946
SmiMI	CAYNNNNRTG	2 cut(s)	460, 632
Sse9I	AATT	4 cut(s)	285, 346, 421, 913
SsiI	CCGC	4 cut(s)	14, 50, 122, 994
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	227, 276
StyD4I	CCNGG	4 cut(s)	280, 906, 943, 944
TaaI	ACNGT	4 cut(s)	310, 383, 619, 729
TaqI	TCGA	3 cut(s)	401, 507, 537
TaqII	GACCGA	2 cut(s)	151, 844
TasI	AATT	4 cut(s)	285, 346, 421, 913
TfiI	GAWTC	2 cut(s)	125, 158
Tru1I	TTAA	3 cut(s)	198, 207, 405
Tru9I	TTAA	3 cut(s)	198, 207, 405
TscAI	CASTG	3 cut(s)	156, 622, 938
TseFI	GTSAC	2 cut(s)	169, 179
TseI	GCWGC	2 cut(s)	895, 949
Tsp45I	GTSAC	2 cut(s)	169, 179
TspDTI	ATGAA	3 cut(s)	485, 500, 803
TspGWI	ACGGA	1 cut(s)	536
TspMI	CCCGGG	1 cut(s)	944
TspRI	CASTG	3 cut(s)	156, 622, 938
VpaK11BI	GGWCC	1 cut(s)	856
XapI	RAATTY	2 cut(s)	285, 346
XceI	RCATGY	2 cut(s)	275, 637
XmaI	CCCGGG	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	2 cut(s)	227, 276
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.