AT3G11220

elongator complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001262
Physical Location & Seq
Reverse (-)
3513350 .. 3516447
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11220.2

Sequence Viewer

Length: 1068 bp
ATGGCTGCACCAAACGTTCGTAGTAGTAGCAGCTTCTCTCGCAACATATCAGTTGTGTCATCGCCTCAAATTCCTGGTCTCAAAAGTGGTCCTAATGGCACAGCTTTTATATCGTCAGGGATTCGTGATCTTGACAGGATACTAGGTGGTGGGTATCCTTTGGGAAGCTTAGTAATGGTAATGGAAGATCCTGAAGCACCGCATCATATGGATCTGTTAAGAACTTACATGTCTCAGGGGCTTGTTAACAATCAACCACTTCTTTATGCTAGTCCTTCAAAAGATCCAAAAGGGTTTCTTGGTACTTTGCCGCATCCTGCATCATCCAAAGAGGATAAGCCTACTGCGCCCGACCCTGATCAGGGAGAGAGCTTGAGGATTGCTTGGCAGTATCGGAAGTATTTGGAAAACCAGAAGAATGCTATTGATGATTACTCCAATGACTTTGATATGAGAAAGCCCTTGGAGAGGCAATTTCTGAGCGGACGGCCCATAGATTGTGTCAGTCTGTTAGACTCTTCAGATCTTTCCATTGCTCAGGACCACTGTGCTACGTTTTTATCAAAATTTCCAAGAAACAGCAGTAACATTGCATCTATTGGCCGCATCGCAATCCAGTCTTTTTGCTCTCCCCTGTGTGAGTATTCTGAAAAGGAATCAGACATGCTCTCATTCATAAGATTGCTGAAAAGTATGCTTATGGTTTCAAATGCGGTAGCCATTGTTACTTTCCCGCCTTCCCTGCTCTCCCCATCTTCCTCTAAAAGACTGCAGCATATGGCAGATACCTTGCTCTCTATCAAAGCAATCCCAGATGGTGACAAGGAATTGGAGAAACTCCTCACTGGCTACAAGGATATAAATGGATTCCTCAACATACACAAGGTTGCTCGTATCAACACACAGGTGCCTGTAATTCTTGAGGCAAAAACCTTCTCAATGAGCTTGAAGAAGAGAAGATTCTTGGCTCTAGAGTGTCTGAATCAAGCCCCTGTAGACGGGTCCAGTGGAACATCGTATGGCACATCTGGTAGCTGCTCATCCAAATCCGGAGCACTAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

355

Amino Acids

38.73

Weight (kDa)

8.13

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 21 - 189 1.8e-41 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 907
AccBSI CCGCTC 1 cut(s) 483
AccI GTMKAC 1 cut(s) 996
AccIII TCCGGA 1 cut(s) 1049
AciI CCGC 6 cut(s) 200, 311, 483, 604, 713, 734
AclI AACGTT 1 cut(s) 15
AclWI GGATC 3 cut(s) 182, 219, 278
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 2 cut(s) 69, 566
AcuI CTGAAG 2 cut(s) 213, 504
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 4 cut(s) 361, 362, 468, 998
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 3 cut(s) 279, 708, 949
AjnI CCWGG 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 905
AluBI AGCT 6 cut(s) 33, 104, 168, 372, 945, 1035
AluI AGCT 6 cut(s) 33, 104, 168, 372, 945, 1035
Alw21I GWGCWC 1 cut(s) 1057
Alw26I GTCTC 2 cut(s) 83, 237
AlwI GGATC 3 cut(s) 182, 219, 278
Aor13HI TCCGGA 1 cut(s) 1049
AoxI GGCC 2 cut(s) 488, 601
ApeKI GCWGC 4 cut(s) 5, 30, 772, 1035
ApoI RAATTY 2 cut(s) 69, 566
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 4 cut(s) 89, 489, 541, 1002
AsuHPI GGTGA 1 cut(s) 830
AvaII GGWCC 3 cut(s) 89, 541, 1002
BanI GGYRCC 1 cut(s) 907
Bbv12I GWGCWC 1 cut(s) 1057
BbvI GCAGC 3 cut(s) 42, 784, 1022
BccI CCATC 2 cut(s) 760, 809
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 2 cut(s) 132, 165
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 83, 237
BfaI CTAG 4 cut(s) 143, 270, 971, 1058
BfmI CTRYAG 2 cut(s) 770, 993
BfuI GTATCC 2 cut(s) 132, 165
BglII AGATCT 1 cut(s) 523
BisI GCNGC 6 cut(s) 6, 31, 311, 604, 773, 1036
BlsI GCNGC 6 cut(s) 7, 32, 312, 605, 774, 1037
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 3 cut(s) 89, 541, 1002
BmgT120I GGNCC 4 cut(s) 89, 489, 541, 1002
BmiI GGNNCC 2 cut(s) 909, 1003
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 5 cut(s) 211, 322, 329, 602, 615
Bpu10I CCTNAGC 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 394, 941
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 462
BsaWI WCCGGW 1 cut(s) 1049
Bsc4I CCNNNNNNNGG 4 cut(s) 361, 362, 468, 998
Bse1I ACTGG 3 cut(s) 616, 850, 1005
Bse3DI GCAATG 2 cut(s) 531, 588
BseAI TCCGGA 1 cut(s) 1049
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 3 cut(s) 313, 323, 1040
BseLI CCNNNNNNNGG 4 cut(s) 361, 362, 468, 998
BseMI GCAATG 2 cut(s) 531, 588
BseMII CTCAG 3 cut(s) 248, 470, 551
BseNI ACTGG 3 cut(s) 616, 850, 1005
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 3 cut(s) 42, 784, 1022
BshFI GGCC 2 cut(s) 490, 603
BshNI GGYRCC 1 cut(s) 907
BsiHKAI GWGCWC 1 cut(s) 1057
BsiSI CCGG 1 cut(s) 1050
BslI CCNNNNNNNGG 4 cut(s) 361, 362, 468, 998
BsmAI GTCTC 2 cut(s) 83, 237
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 2 cut(s) 490, 603
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 1057
Bsp13I TCCGGA 1 cut(s) 1049
Bsp143I GATC 6 cut(s) 127, 187, 211, 283, 358, 523
BspACI CCGC 6 cut(s) 200, 311, 483, 604, 713, 734
BspANI GGCC 2 cut(s) 490, 603
BspCNI CTCAG 3 cut(s) 247, 471, 550
BspEI TCCGGA 1 cut(s) 1049
BspLI GGNNCC 2 cut(s) 909, 1003
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 3 cut(s) 182, 219, 278
BspT107I GGYRCC 1 cut(s) 907
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 483
BsrDI GCAATG 2 cut(s) 531, 588
BsrI ACTGG 3 cut(s) 616, 850, 1005
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 6 cut(s) 127, 187, 211, 283, 358, 523
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 2 cut(s) 523, 947
BstDEI CTNAG 4 cut(s) 169, 234, 479, 537
BstENI CCTNNNNNAGG 1 cut(s) 466
BstF5I GGATG 3 cut(s) 313, 323, 1040
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 6 cut(s) 130, 190, 214, 286, 361, 526
BstMAI GTCTC 2 cut(s) 83, 237
BstMBI GATC 6 cut(s) 127, 187, 211, 283, 358, 523
BstMWI GCNNNNNNNGC 3 cut(s) 39, 346, 742
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 2 cut(s) 232, 667
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 770, 993
BstV1I GCAGC 3 cut(s) 42, 784, 1022
BstX2I RGATCY 4 cut(s) 187, 211, 283, 523
BstYI RGATCY 4 cut(s) 187, 211, 283, 523
BsuI GTATCC 2 cut(s) 132, 165
BsuRI GGCC 2 cut(s) 490, 603
BtgZI GCGATG 2 cut(s) 45, 592
BtsCI GGATG 3 cut(s) 313, 323, 1040
BtsIMutI CAGTG 3 cut(s) 544, 843, 1012
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 4 cut(s) 89, 489, 541, 1002
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 229, 664
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 4 cut(s) 169, 234, 479, 537
DpnI GATC 6 cut(s) 129, 189, 213, 285, 360, 525
DpnII GATC 6 cut(s) 127, 187, 211, 283, 358, 523
EaeI YGGCCR 1 cut(s) 601
Eam1104I CTCTTC 2 cut(s) 523, 947
EarI CTCTTC 2 cut(s) 523, 947
Eco130I CCWWGG 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 83
Eco47I GGWCC 3 cut(s) 89, 541, 1002
Eco57I CTGAAG 2 cut(s) 213, 504
EcoNI CCTNNNNNAGG 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 2 cut(s) 232, 667
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 2 cut(s) 228, 663
FauI CCCGC 1 cut(s) 741
FauNDI CATATG 2 cut(s) 207, 777
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 6 cut(s) 6, 31, 311, 604, 773, 1036
FokI GGATG 3 cut(s) 300, 310, 1027
Fsp4HI GCNGC 6 cut(s) 6, 31, 311, 604, 773, 1036
FspBI CTAG 4 cut(s) 143, 270, 971, 1058
GlaI GCGC 1 cut(s) 348
GluI GCNGC 6 cut(s) 6, 31, 311, 604, 773, 1036
HaeIII GGCC 2 cut(s) 490, 603
HapII CCGG 1 cut(s) 1050
HhaI GCGC 1 cut(s) 349
Hin1II CATG 2 cut(s) 232, 667
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 6 cut(s) 121, 515, 656, 867, 960, 982
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 1050
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 2 cut(s) 247, 997
Hpy188I TCNGA 6 cut(s) 396, 480, 523, 649, 661, 981
Hpy188III TCNNGA 7 cut(s) 125, 131, 191, 539, 920, 971, 1050
Hpy8I GTNNAC 2 cut(s) 247, 997
HpyAV CCTTC 3 cut(s) 285, 747, 943
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 2 cut(s) 15, 554
HpyCH4V TGCA 4 cut(s) 8, 320, 593, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 346, 742
HpyF3I CTNAG 4 cut(s) 169, 234, 479, 537
HpySE526I ACGT 2 cut(s) 15, 554
Hsp92II CATG 2 cut(s) 232, 667
HspAI GCGC 1 cut(s) 347
Kpn2I TCCGGA 1 cut(s) 1049
Ksp22I TGATCA 1 cut(s) 358
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 6 cut(s) 127, 187, 211, 283, 358, 523
LmnI GCTCC 1 cut(s) 1052
Lsp1109I GCAGC 3 cut(s) 42, 784, 1022
LweI GCATC 5 cut(s) 211, 322, 329, 602, 615
MaeI CTAG 4 cut(s) 143, 270, 971, 1058
MaeII ACGT 2 cut(s) 15, 554
MaeIII GTNAC 3 cut(s) 584, 724, 818
MalI GATC 6 cut(s) 129, 189, 213, 285, 360, 525
MbiI CCGCTC 1 cut(s) 483
MboI GATC 6 cut(s) 127, 187, 211, 283, 358, 523
MboII GAAGA 7 cut(s) 197, 427, 510, 747, 961, 964, 969
MflI RGATCY 4 cut(s) 187, 211, 283, 523
MhlI GDGCHC 1 cut(s) 1057
MluCI AATT 5 cut(s) 69, 473, 566, 827, 915
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 8 cut(s) 75, 325, 369, 462, 769, 851, 881, 916
MroI TCCGGA 1 cut(s) 1049
MseI TTAA 2 cut(s) 218, 246
MslI CAYNNNNRTG 1 cut(s) 905
MspI CCGG 1 cut(s) 1050
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 39, 346, 742
NdeI CATATG 2 cut(s) 207, 777
NdeII GATC 6 cut(s) 127, 187, 211, 283, 358, 523
NlaIII CATG 2 cut(s) 232, 667
NlaIV GGNNCC 2 cut(s) 909, 1003
NmuCI GTSAC 1 cut(s) 818
NspI RCATGY 2 cut(s) 232, 667
OliI CACNNNNGTG 1 cut(s) 905
PciI ACATGT 1 cut(s) 228
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 5 cut(s) 121, 656, 867, 960, 982
PkrI GCNGC 6 cut(s) 7, 32, 312, 605, 774, 1037
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PscI ACATGT 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 909, 1003
PspPI GGNCC 4 cut(s) 89, 489, 541, 1002
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 4 cut(s) 187, 211, 283, 523
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 2 cut(s) 218, 246
SatI GCNGC 6 cut(s) 6, 31, 311, 604, 773, 1036
Sau3AI GATC 6 cut(s) 127, 187, 211, 283, 358, 523
Sau96I GGNCC 4 cut(s) 89, 489, 541, 1002
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 1057
SfaNI GCATC 5 cut(s) 211, 322, 329, 602, 615
SfcI CTRYAG 2 cut(s) 770, 993
SinI GGWCC 3 cut(s) 89, 541, 1002
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 2 cut(s) 373, 920
SmoI CTYRAG 2 cut(s) 373, 920
Sse9I AATT 5 cut(s) 69, 473, 566, 827, 915
SsiI CCGC 6 cut(s) 200, 311, 483, 604, 713, 734
SspMI CTAG 4 cut(s) 143, 270, 971, 1058
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 2 cut(s) 18, 557
TasI AATT 5 cut(s) 69, 473, 566, 827, 915
TauI GCSGC 2 cut(s) 313, 606
TfiI GAWTC 5 cut(s) 121, 656, 867, 960, 982
Tru1I TTAA 2 cut(s) 218, 246
Tru9I TTAA 2 cut(s) 218, 246
TscAI CASTG 3 cut(s) 551, 850, 1012
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 4 cut(s) 5, 30, 772, 1035
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 1 cut(s) 664
TspRI CASTG 3 cut(s) 551, 850, 1012
VpaK11BI GGWCC 3 cut(s) 89, 541, 1002
XagI CCTNNNNNAGG 1 cut(s) 466
XapI RAATTY 2 cut(s) 69, 566
XbaI TCTAGA 1 cut(s) 970
XceI RCATGY 2 cut(s) 232, 667
XmiI GTMKAC 1 cut(s) 996
XspI CTAG 4 cut(s) 143, 270, 971, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.