Rh6DG164600

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001262
Physical Location & Seq
Forward (+)
25285780 .. 25287839
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG164600.1

Sequence Viewer

Length: 525 bp
ATGGTGATGGAAGATGCAGAAGCACCTCATCATATGCTTTTACTTAGGGATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAAGACAATTTCTTGGTACTTTGCCTAGTCCAGCGGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTAAGGATAGCTTGGCAATACAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAATGGGAAACATGAGTTCAGCAACAACTTTGACTTGCGGAAGCCCTTGGAGAGGCAGTTTCTTACGGGCAAGCGAATAGATTGTGCTAGCATTCTTGATTCTGCAAATCTTGTCACACTTTATGATCGCTATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTTTCCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGCGCAAATTAACACACAGGTAGTGCAAAAGTTTGCTTCACCCAAATCTAACACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

174

Amino Acids

19.84

Weight (kDa)

6.2

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 1 - 109 1.2e-27 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 436
AciI CCGC 2 cut(s) 146, 298
AfaI GTAC 2 cut(s) 130, 150
AfiI CCNNNNNNNGG 4 cut(s) 106, 187, 312, 436
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 63, 171
AoxI GGCC 1 cut(s) 442
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 3 cut(s) 16, 245, 495
AsuNHI GCTAGC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 431
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 63, 171
BfaI CTAG 3 cut(s) 138, 168, 348
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 111, 150
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 1 cut(s) 4
BmtI GCTAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 105, 306
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 187, 312, 436
Bse1I ACTGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 2 cut(s) 105, 306
BseLI CCNNNNNNNGG 4 cut(s) 106, 187, 312, 436
BseNI ACTGG 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 476
BshFI GGCC 1 cut(s) 444
BshNI GGYRCC 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 106, 187, 312, 436
BsmAI GTCTC 2 cut(s) 63, 171
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 444
Bso31I GGTCTC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 184, 385
BspACI CCGC 2 cut(s) 146, 298
BspANI GGCC 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 111, 150
BspOI GCTAGC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 105, 306
BssMI GATC 2 cut(s) 184, 385
BssT1I CCWWGG 2 cut(s) 105, 306
Bst2UI CCWGG 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 97, 332, 349
BstDEI CTNAG 1 cut(s) 44
BstENI CCTNNNNNAGG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 2 cut(s) 187, 388
BstMAI GTCTC 2 cut(s) 63, 171
BstMBI GATC 2 cut(s) 184, 385
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 3 cut(s) 97, 332, 349
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 129, 149
CviAII CATG 3 cut(s) 55, 272, 436
CviJI RGCY 5 cut(s) 99, 104, 209, 304, 444
CviKI_1 RGCY 5 cut(s) 99, 104, 209, 304, 444
CviQI GTAC 2 cut(s) 129, 149
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 186, 387
DpnII GATC 2 cut(s) 184, 385
Eco130I CCWWGG 2 cut(s) 105, 306
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 105, 306
ErhI CCWWGG 2 cut(s) 105, 306
FaeI CATG 3 cut(s) 58, 275, 439
FaiI YATR 8 cut(s) 33, 35, 56, 93, 273, 384, 393, 437
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FatI CATG 3 cut(s) 54, 271, 435
FauNDI CATATG 1 cut(s) 33
FbaI TGATCA 1 cut(s) 184
FspBI CTAG 3 cut(s) 138, 168, 348
GlaI GCGC 1 cut(s) 468
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 444
HhaI GCGC 1 cut(s) 469
Hin1II CATG 3 cut(s) 58, 275, 439
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HinfI GANTC 2 cut(s) 66, 359
HphI GGTGA 3 cut(s) 16, 245, 495
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 176, 188, 356
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 95, 455
HpyCH4V TGCA 5 cut(s) 17, 95, 365, 457, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 3 cut(s) 58, 275, 439
HspAI GCGC 1 cut(s) 467
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 385
LmnI GCTCC 1 cut(s) 420
LpnPI CCDG 9 cut(s) 114, 156, 173, 195, 230, 408, 416, 443, 467
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 138, 168, 348
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 186, 387
MboI GATC 2 cut(s) 184, 385
MboII GAAGA 1 cut(s) 23
MluCI AATT 3 cut(s) 119, 404, 471
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 3 cut(s) 36, 306, 388
MseI TTAA 3 cut(s) 200, 450, 474
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 431
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeI CATATG 1 cut(s) 33
NdeII GATC 2 cut(s) 184, 385
NheI GCTAGC 1 cut(s) 347
NlaIII CATG 3 cut(s) 58, 275, 439
NlaIV GGNNCC 2 cut(s) 111, 150
NmuCI GTSAC 1 cut(s) 373
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 429
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 111, 150
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
RsaI GTAC 2 cut(s) 130, 150
RsaNI GTAC 2 cut(s) 129, 149
SaqAI TTAA 3 cut(s) 200, 450, 474
Sau3AI GATC 2 cut(s) 184, 385
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 431
SetI ASST 3 cut(s) 28, 211, 486
SfaNI GCATC 1 cut(s) 4
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 3 cut(s) 119, 404, 471
SsiI CCGC 2 cut(s) 146, 298
SspMI CTAG 3 cut(s) 138, 168, 348
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 2 cut(s) 105, 306
TaqI TCGA 1 cut(s) 175
TasI AATT 3 cut(s) 119, 404, 471
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 200, 450, 474
Tru9I TTAA 3 cut(s) 200, 450, 474
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 43, 174
TspRI CASTG 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XspI CTAG 3 cut(s) 138, 168, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.