RLG00000017820

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001262
Physical Location & Seq
Reverse (-)
21708468 .. 21709490
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017820

Sequence Viewer

Length: 534 bp
ATGGCTGCTACCAGGACTAGGACGAGTAGCTTCTCTCGTAGTTTTTCAGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATGGGACAATGTTTGTGTCATCTGGGATTCCAGACCTTGACAGTAATCTTCTAACTAATAAAGTATTGGAAATATCAAGTGACAGCAACATTTCTTGTGTTGGTCGTATTGCCATTCAAACATTCTATGCTTCACAGTATGGATATTCTAGCCTGGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAAGCATGCTACAATCCTCAAATGCAGTTGCTGTTGTGACATTTCTGCTTAGTCTTCTTTCATCATCCTCCTCTATAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCAGATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTCTAGTGGGAGTTCATATGGCACTTCTTGTAGTTGTTTTGGGTCCTCGAAAACTGGATATCTTGATTTTTAGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

178

Amino Acids

19.15

Weight (kDa)

6.82

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 57 - 151 4.5e-16 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 451
AfiI CCNNNNNNNGG 3 cut(s) 18, 250, 451
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 4 cut(s) 11, 70, 243, 444
AluBI AGCT 2 cut(s) 30, 57
AluI AGCT 2 cut(s) 30, 57
AlwNI CAGNNNCTG 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 5, 364
AspS9I GGNCC 2 cut(s) 86, 497
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 2 cut(s) 86, 497
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 354
BciT130I CCWGG 4 cut(s) 13, 72, 245, 446
BfaI CTAG 3 cut(s) 18, 240, 458
BglII AGATCT 1 cut(s) 272
BisI GCNGC 2 cut(s) 6, 365
BlsI GCNGC 2 cut(s) 7, 366
Bme1390I CCNGG 4 cut(s) 13, 72, 245, 446
Bme18I GGWCC 2 cut(s) 86, 497
BmgT120I GGNCC 2 cut(s) 86, 497
BmiI GGNNCC 2 cut(s) 88, 498
BmrFI CCNGG 4 cut(s) 13, 72, 245, 446
BpiI GAAGAC 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 250, 451
Bse1I ACTGG 2 cut(s) 442, 513
BseBI CCWGG 4 cut(s) 13, 72, 245, 446
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 3 cut(s) 18, 250, 451
BseNI ACTGG 2 cut(s) 442, 513
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 376
BslFI GGGAC 2 cut(s) 109, 266
BslI CCNNNNNNNGG 3 cut(s) 18, 250, 451
BsmFI GGGAC 2 cut(s) 109, 266
Bsp143I GATC 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 88, 498
BsrI ACTGG 2 cut(s) 442, 513
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 272
Bst2UI CCWGG 4 cut(s) 13, 72, 245, 446
Bst4CI ACNGT 2 cut(s) 134, 228
BstC8I GCNNGC 2 cut(s) 55, 287
BstDEI CTNAG 2 cut(s) 269, 329
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 1 cut(s) 275
BstMBI GATC 1 cut(s) 272
BstNI CCWGG 4 cut(s) 13, 72, 245, 446
BstNSI RCATGY 2 cut(s) 259, 289
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 4 cut(s) 11, 70, 243, 444
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 55, 287
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 86, 497
CviAII CATG 5 cut(s) 83, 256, 286, 370, 451
CviJI RGCY 4 cut(s) 5, 30, 57, 243
CviKI_1 RGCY 4 cut(s) 5, 30, 57, 243
DdeI CTNAG 2 cut(s) 269, 329
DpnI GATC 1 cut(s) 274
DpnII GATC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 86, 497
Eco91I GGTNACC 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 4 cut(s) 11, 70, 243, 444
EcoRV GATATC 1 cut(s) 514
FaeI CATG 5 cut(s) 86, 259, 289, 373, 454
FaqI GGGAC 2 cut(s) 109, 266
FatI CATG 5 cut(s) 82, 255, 285, 369, 450
FauNDI CATATG 1 cut(s) 471
Fnu4HI GCNGC 2 cut(s) 6, 365
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 6, 365
FspBI CTAG 3 cut(s) 18, 240, 458
GluI GCNGC 2 cut(s) 6, 365
Hin1II CATG 5 cut(s) 86, 259, 289, 373, 454
HinfI GANTC 2 cut(s) 75, 118
HphI GGTGA 1 cut(s) 51
Hpy188III TCNNGA 3 cut(s) 122, 404, 517
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 134, 228
HpyCH4V TGCA 2 cut(s) 53, 305
HpyF3I CTNAG 2 cut(s) 269, 329
Hsp92II CATG 5 cut(s) 86, 259, 289, 373, 454
Kzo9I GATC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 435
Lsp1109I GCAGC 1 cut(s) 376
MaeI CTAG 3 cut(s) 18, 240, 458
MaeIII GTNAC 3 cut(s) 170, 316, 440
MalI GATC 1 cut(s) 274
MboI GATC 1 cut(s) 272
MboII GAAGA 2 cut(s) 131, 326
MflI RGATCY 1 cut(s) 272
MluCI AATT 2 cut(s) 399, 419
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 6 cut(s) 72, 307, 358, 361, 403, 510
MseI TTAA 1 cut(s) 393
MspR9I CCNGG 4 cut(s) 13, 72, 245, 446
MvaI CCWGG 4 cut(s) 13, 72, 245, 446
NdeI CATATG 1 cut(s) 471
NdeII GATC 1 cut(s) 272
NlaIII CATG 5 cut(s) 86, 259, 289, 373, 454
NlaIV GGNNCC 2 cut(s) 88, 498
NmuCI GTSAC 2 cut(s) 170, 316
NspI RCATGY 2 cut(s) 259, 289
PaeI GCATGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 2 cut(s) 7, 366
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 4 cut(s) 11, 70, 243, 444
PspEI GGTNACC 1 cut(s) 440
PspGI CCWGG 4 cut(s) 11, 70, 243, 444
PspN4I GGNNCC 2 cut(s) 88, 498
PspPI GGNCC 2 cut(s) 86, 497
PspPPI RGGWCCY 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 272
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 6, 365
Sau3AI GATC 1 cut(s) 272
Sau96I GGNCC 2 cut(s) 86, 497
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 4 cut(s) 13, 72, 245, 446
SetI ASST 6 cut(s) 32, 52, 59, 64, 129, 383
SinI GGWCC 2 cut(s) 86, 497
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 289
Sse9I AATT 2 cut(s) 399, 419
SspMI CTAG 3 cut(s) 18, 240, 458
StyD4I CCNGG 4 cut(s) 11, 70, 243, 444
TaaI ACNGT 2 cut(s) 134, 228
TaqI TCGA 1 cut(s) 502
TasI AATT 2 cut(s) 399, 419
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TseFI GTSAC 2 cut(s) 170, 316
TseI GCWGC 2 cut(s) 5, 364
Tsp45I GTSAC 2 cut(s) 170, 316
TspDTI ATGAA 2 cut(s) 330, 458
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 86, 497
XceI RCATGY 2 cut(s) 259, 289
XspI CTAG 3 cut(s) 18, 240, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.