RLG00000017818

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001262
Physical Location & Seq
Reverse (-)
21695219 .. 21697709
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017818

Sequence Viewer

Length: 969 bp
ATGGCTGCAACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTTGGGTGCAAGCTCCCCTCAAATCCCAGGACTCAAGCATGGACCCAATGGCACAATAAATATTAGGTGGTGGTTTTGCTCTAGGAAGCCTAGTAACGGTGATGGAAGATGCGAAGCACCTCATCATATGCTTTTACTTAGGAATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGCCGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATACAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAATGGGAAACATGAGTTGTGCAACAACTTTGACTTGCGGAAGCCCTTGGAGAGGCAGTTTCTTACGAGCAAGCGAATAGATTGTGCTAGCATTCTCGATTCTCCAAATCTTGTGACACTTTATGATCGTTTTAATACTGCTGCATTGCAGGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAACCATGCTACGATCTTCAAATGCAGTTGCTGTTGTGACATTTCCACCTAGTCTTCTCTCATCATCCTCCTCTACAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCAGATGAGAACAAGGAATTGGCAATGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGCGCAAATTAACACACAGGTTCCTGTCATTCTTGAGGCAACAACCTTCTCAATAAAGCTGCAAAAGCGGAGGATTTTGGTTTTAGAGTGTCTAAACCAGGCCCCTATCGATGGTTCTAGTGGGAATTCATATGGCACTTCTAGGAGTTGTTCTGGGTCCTCTAAAACTGGATATCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

323

Amino Acids

35.96

Weight (kDa)

9.44

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 54 - 158 3.2e-25 PAXNEB protein
PAXNEB PF05625 179 - 322 1.9e-32 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 754
AciI CCGC 2 cut(s) 436, 850
AcsI RAATTY 2 cut(s) 187, 907
AfaI GTAC 2 cut(s) 268, 288
AfiI CCNNNNNNNGG 7 cut(s) 18, 140, 244, 325, 450, 754, 893
AgsI TTSAA 1 cut(s) 603
AjnI CCWGG 3 cut(s) 70, 747, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
AluBI AGCT 4 cut(s) 30, 57, 347, 841
AluI AGCT 4 cut(s) 30, 57, 347, 841
Alw26I GTCTC 2 cut(s) 201, 309
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 2 cut(s) 760, 882
ApeKI GCWGC 4 cut(s) 5, 539, 667, 841
ApoI RAATTY 2 cut(s) 187, 907
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 4 cut(s) 86, 247, 883, 939
AsuHPI GGTGA 2 cut(s) 155, 383
AsuNHI GCTAGC 1 cut(s) 485
AvaII GGWCC 3 cut(s) 86, 247, 939
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 3 cut(s) 526, 679, 828
BccI CCATC 3 cut(s) 140, 657, 887
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 3 cut(s) 72, 749, 881
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 201, 309
BfaI CTAG 9 cut(s) 18, 126, 135, 276, 306, 486, 633, 900, 924
BglII AGATCT 1 cut(s) 575
BisI GCNGC 4 cut(s) 6, 540, 668, 842
BlsI GCNGC 4 cut(s) 7, 541, 669, 843
Bme1390I CCNGG 3 cut(s) 72, 749, 881
Bme18I GGWCC 3 cut(s) 86, 247, 939
BmgT120I GGNCC 4 cut(s) 86, 247, 883, 939
BmiI GGNNCC 5 cut(s) 88, 249, 804, 885, 940
BmrFI CCNGG 3 cut(s) 72, 749, 881
BmsI GCATC 1 cut(s) 143
BmtI GCTAGC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 629
BpuEI CTTGAG 3 cut(s) 62, 183, 836
Bsa29I ATCGAT 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 70, 243, 444
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 440, 470
Bsc4I CCNNNNNNNGG 7 cut(s) 18, 140, 244, 325, 450, 754, 893
Bse1I ACTGG 2 cut(s) 745, 955
Bse3DI GCAATG 2 cut(s) 542, 735
BseBI CCWGG 3 cut(s) 72, 749, 881
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 3 cut(s) 70, 243, 444
BseGI GGATG 1 cut(s) 647
BseLI CCNNNNNNNGG 7 cut(s) 18, 140, 244, 325, 450, 754, 893
BseMI GCAATG 2 cut(s) 542, 735
BseNI ACTGG 2 cut(s) 745, 955
BseRI GAGGAG 1 cut(s) 643
BseXI GCAGC 3 cut(s) 526, 679, 828
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 794
BshFI GGCC 2 cut(s) 762, 884
BshVI ATCGAT 1 cut(s) 891
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 7 cut(s) 18, 140, 244, 325, 450, 754, 893
BsmAI GTCTC 2 cut(s) 201, 309
BsmFI GGGAC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 2 cut(s) 762, 884
Bso31I GGTCTC 1 cut(s) 309
Bsp143I GATC 4 cut(s) 322, 523, 575, 596
BspACI CCGC 2 cut(s) 436, 850
BspANI GGCC 2 cut(s) 762, 884
BspDI ATCGAT 1 cut(s) 891
BspLI GGNNCC 5 cut(s) 88, 249, 804, 885, 940
BspOI GCTAGC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 2 cut(s) 542, 735
BsrI ACTGG 2 cut(s) 745, 955
BssECI CCNNGG 3 cut(s) 70, 243, 444
BssMI GATC 4 cut(s) 322, 523, 575, 596
BssT1I CCWWGG 2 cut(s) 243, 444
Bst2UI CCWGG 3 cut(s) 72, 749, 881
Bst4CI ACNGT 2 cut(s) 143, 258
BstC8I GCNNGC 4 cut(s) 55, 235, 470, 487
BstDEI CTNAG 2 cut(s) 182, 572
BstEII GGTNACC 1 cut(s) 743
BstENI CCTNNNNNAGG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 647
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 4 cut(s) 325, 526, 578, 599
BstMAI GTCTC 2 cut(s) 201, 309
BstMBI GATC 4 cut(s) 322, 523, 575, 596
BstMWI GCNNNNNNNGC 3 cut(s) 36, 239, 847
BstNI CCWGG 3 cut(s) 72, 749, 881
BstNSI RCATGY 1 cut(s) 562
BstPI GGTNACC 1 cut(s) 743
BstSCI CCNGG 3 cut(s) 70, 747, 879
BstV1I GCAGC 3 cut(s) 526, 679, 828
BstV2I GAAGAC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
Bsu15I ATCGAT 1 cut(s) 891
BsuRI GGCC 2 cut(s) 762, 884
BsuTUI ATCGAT 1 cut(s) 891
BtsCI GGATG 1 cut(s) 647
Cac8I GCNNGC 4 cut(s) 55, 235, 470, 487
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 4 cut(s) 86, 247, 883, 939
ClaI ATCGAT 1 cut(s) 891
Csp6I GTAC 2 cut(s) 267, 287
CviAII CATG 7 cut(s) 83, 193, 410, 559, 589, 673, 754
CviQI GTAC 2 cut(s) 267, 287
DdeI CTNAG 2 cut(s) 182, 572
DpnI GATC 4 cut(s) 324, 525, 577, 598
DpnII GATC 4 cut(s) 322, 523, 575, 596
Eco130I CCWWGG 2 cut(s) 243, 444
Eco31I GGTCTC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 956
Eco47I GGWCC 3 cut(s) 86, 247, 939
Eco91I GGTNACC 1 cut(s) 743
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoO109I RGGNCCY 3 cut(s) 247, 883, 939
EcoO65I GGTNACC 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 3 cut(s) 70, 747, 879
EcoRV GATATC 1 cut(s) 956
EcoT14I CCWWGG 2 cut(s) 243, 444
ErhI CCWWGG 2 cut(s) 243, 444
FaeI CATG 7 cut(s) 86, 196, 413, 562, 592, 676, 757
FaqI GGGAC 1 cut(s) 569
FatI CATG 7 cut(s) 82, 192, 409, 558, 588, 672, 753
FauNDI CATATG 2 cut(s) 171, 913
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 4 cut(s) 6, 540, 668, 842
FokI GGATG 1 cut(s) 634
Fsp4HI GCNGC 4 cut(s) 6, 540, 668, 842
FspBI CTAG 9 cut(s) 18, 126, 135, 276, 306, 486, 633, 900, 924
GlaI GCGC 1 cut(s) 786
GluI GCNGC 4 cut(s) 6, 540, 668, 842
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 762, 884
HhaI GCGC 1 cut(s) 787
Hin1II CATG 7 cut(s) 86, 196, 413, 562, 592, 676, 757
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HinfI GANTC 3 cut(s) 75, 204, 497
HphI GGTGA 2 cut(s) 155, 383
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 6 cut(s) 314, 326, 494, 707, 815, 959
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 4 cut(s) 233, 577, 773, 838
HpyCH4III ACNGT 2 cut(s) 143, 258
HpyCH4V TGCA 9 cut(s) 8, 53, 233, 420, 542, 547, 608, 775, 844
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 239, 847
HpyF3I CTNAG 2 cut(s) 182, 572
Hsp92II CATG 7 cut(s) 86, 196, 413, 562, 592, 676, 757
HspAI GCGC 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 322, 523, 575, 596
LmnI GCTCC 2 cut(s) 62, 738
Lsp1109I GCAGC 3 cut(s) 526, 679, 828
LweI GCATC 1 cut(s) 143
MaeI CTAG 9 cut(s) 18, 126, 135, 276, 306, 486, 633, 900, 924
MaeIII GTNAC 4 cut(s) 137, 511, 619, 743
MalI GATC 4 cut(s) 324, 525, 577, 598
MboI GATC 4 cut(s) 322, 523, 575, 596
MboII GAAGA 3 cut(s) 162, 591, 629
MflI RGATCY 1 cut(s) 575
MluCI AATT 5 cut(s) 187, 702, 722, 789, 907
MlyI GAGTC 2 cut(s) 69, 198
MnlI CCTC 9 cut(s) 72, 174, 333, 444, 661, 664, 811, 846, 952
MseI TTAA 4 cut(s) 531, 696, 768, 792
MspR9I CCNGG 3 cut(s) 72, 749, 881
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 3 cut(s) 72, 749, 881
MwoI GCNNNNNNNGC 3 cut(s) 36, 239, 847
NdeI CATATG 2 cut(s) 171, 913
NdeII GATC 4 cut(s) 322, 523, 575, 596
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 7 cut(s) 86, 196, 413, 562, 592, 676, 757
NlaIV GGNNCC 5 cut(s) 88, 249, 804, 885, 940
NmuCI GTSAC 2 cut(s) 511, 619
NspI RCATGY 1 cut(s) 562
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 497
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 4 cut(s) 7, 541, 669, 843
PleI GAGTC 2 cut(s) 69, 198
PpsI GAGTC 2 cut(s) 69, 198
PpuMI RGGWCCY 2 cut(s) 247, 939
Psp5II RGGWCCY 2 cut(s) 247, 939
Psp6I CCWGG 3 cut(s) 70, 747, 879
PspEI GGTNACC 1 cut(s) 743
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 3 cut(s) 70, 747, 879
PspN4I GGNNCC 5 cut(s) 88, 249, 804, 885, 940
PspPI GGNCC 4 cut(s) 86, 247, 883, 939
PspPPI RGGWCCY 2 cut(s) 247, 939
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 575
RsaI GTAC 2 cut(s) 268, 288
RsaNI GTAC 2 cut(s) 267, 287
SaqAI TTAA 4 cut(s) 531, 696, 768, 792
SatI GCNGC 4 cut(s) 6, 540, 668, 842
Sau3AI GATC 4 cut(s) 322, 523, 575, 596
Sau96I GGNCC 4 cut(s) 86, 247, 883, 939
SchI GAGTC 2 cut(s) 69, 198
ScrFI CCNGG 3 cut(s) 72, 749, 881
SfaNI GCATC 1 cut(s) 143
SinI GGWCC 3 cut(s) 86, 247, 939
SmlI CTYRAG 3 cut(s) 77, 198, 815
SmoI CTYRAG 3 cut(s) 77, 198, 815
Sse9I AATT 5 cut(s) 187, 702, 722, 789, 907
SsiI CCGC 2 cut(s) 436, 850
SspI AATATT 1 cut(s) 106
SspMI CTAG 9 cut(s) 18, 126, 135, 276, 306, 486, 633, 900, 924
StyD4I CCNGG 3 cut(s) 70, 747, 879
StyI CCWWGG 2 cut(s) 243, 444
TaaI ACNGT 2 cut(s) 143, 258
TaqI TCGA 3 cut(s) 313, 495, 891
TasI AATT 5 cut(s) 187, 702, 722, 789, 907
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 4 cut(s) 531, 696, 768, 792
Tru9I TTAA 4 cut(s) 531, 696, 768, 792
TseFI GTSAC 2 cut(s) 511, 619
TseI GCWGC 4 cut(s) 5, 539, 667, 841
Tsp45I GTSAC 2 cut(s) 511, 619
TspDTI ATGAA 3 cut(s) 181, 312, 900
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 3 cut(s) 86, 247, 939
XagI CCTNNNNNAGG 1 cut(s) 448
XapI RAATTY 2 cut(s) 187, 907
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XspI CTAG 9 cut(s) 18, 126, 135, 276, 306, 486, 633, 900, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.