Prupe.6G206700_v2.0.a1

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001262
Physical Location & Seq
Forward (+)
21524947 .. 21527228
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G206700.1

Sequence Viewer

Length: 804 bp
ATGTCTGCGACCAAGATTCGGACAAGTTGCTTCTCTCCCAACTTTGTAGCTGCAAACTCACCTCAATTCCCTGGACTCATGCGTGGTCCTAATGGCACAATGTTCATTTCATCTGGGATACTGGAACTTGACAGTAATCTTCTATCACTAATAGTGATGGAAGATGCAGAAGTTTCTCATCATATGCTTTTGATTAGAAATTTTATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTGTGCAAGCCCATCCAAGGACCCAAGACAGTTTCTCGGTACTTTGCCTTGTCCAGCTTTACCCAAAGATGATAAGTCTAGTCATCGAGATCCTGATCAGGAGAAAGGGTTGAGAATAGCTTGGCAATATAAGAAGTATTTTTGGGAAAATCAGCAGAGTTTTGATAGTCAAGGTGGCAAAAAACATGAGTTCTGCAACGAATTTGATTTTGGGAAGCCATTGGAGAGAACTGATGACAGCATTTCTTCTGTTGGTCGTATTGCAATTCAATCATTCTGTGTTCCACAATGTGAATATTCCAACATGGTTAACGGGGACAAGGAATTGGAAAAGCTCCTTAACGGTAACATGGTTGGCCTTCTCAATGTGCACAAAGTTGCACGTATTAATACACAGGTTCATGTGATTCTTGAGTCAACAACCTTCTCAATAAATTTGAAAAAGCGGAGGTTTATGGTTTTAGAATGTCTAAACCAAGTCCCTATCGATGGTTCAAGTGGAAGTTCGTATGGCACTTCTAGTAGTTGTTCTGTGTCCTCTAAAACTGGGACGCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

268

Amino Acids

29.68

Weight (kDa)

7.03

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 685
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 3 cut(s) 199, 440, 673
AdeI CACNNNGTG 1 cut(s) 530
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 3 cut(s) 18, 256, 728
AgsI TTSAA 3 cut(s) 509, 679, 735
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 4 cut(s) 50, 296, 359, 574
AluI AGCT 4 cut(s) 50, 296, 359, 574
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 608
AlwI GGATC 1 cut(s) 323
AoxI GGCC 1 cut(s) 595
ApaLI GTGCAC 1 cut(s) 608
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 3 cut(s) 199, 440, 673
AseI ATTAAT 1 cut(s) 627
AspS9I GGNCC 2 cut(s) 86, 259
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 2 cut(s) 86, 259
BaeGI GKGCMC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 37
BccI CCATC 3 cut(s) 151, 259, 722
BciT130I CCWGG 1 cut(s) 72
BciVI GTATCC 1 cut(s) 111
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 2 cut(s) 318, 759
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 2 cut(s) 86, 259
BmgT120I GGNCC 2 cut(s) 86, 259
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 72
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 795
BpuEI CTTGAG 2 cut(s) 195, 671
Bsa29I ATCGAT 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 70, 255
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 256, 728
Bse1I ACTGG 2 cut(s) 126, 790
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 2 cut(s) 70, 255
BseGI GGATG 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 18, 256, 728
BseNI ACTGG 2 cut(s) 126, 790
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 726
BsiHKAI GWGCWC 1 cut(s) 612
BslFI GGGAC 2 cut(s) 569, 704
BslI CCNNNNNNNGG 3 cut(s) 18, 256, 728
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 2 cut(s) 569, 704
BsnI GGCC 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 2 cut(s) 328, 334
BspACI CCGC 1 cut(s) 685
BspANI GGCC 1 cut(s) 597
BspDI ATCGAT 1 cut(s) 726
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 323
BsrI ACTGG 2 cut(s) 126, 790
BssECI CCNNGG 2 cut(s) 70, 255
BssMI GATC 2 cut(s) 328, 334
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 134, 270, 584
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 2 cut(s) 331, 337
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 328, 334
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 726
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 726
BtsCI GGATG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 86, 259
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 1 cut(s) 799
Csp6I GTAC 1 cut(s) 279
CviAII CATG 5 cut(s) 79, 425, 544, 589, 641
CviJI RGCY 7 cut(s) 50, 249, 296, 359, 457, 574, 597
CviKI_1 RGCY 7 cut(s) 50, 249, 296, 359, 457, 574, 597
CviQI GTAC 1 cut(s) 279
DpnI GATC 2 cut(s) 330, 336
DpnII GATC 2 cut(s) 328, 334
DraIII CACNNNGTG 1 cut(s) 530
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 86, 259
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 82, 428, 547, 592, 644
FaqI GGGAC 2 cut(s) 569, 704
FatI CATG 5 cut(s) 78, 424, 543, 588, 640
FauNDI CATATG 1 cut(s) 183
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 318, 759
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 597
HgaI GACGC 1 cut(s) 799
Hin1II CATG 5 cut(s) 82, 428, 547, 592, 644
HincII GTYRAC 2 cut(s) 550, 657
HindII GTYRAC 2 cut(s) 550, 657
HinfI GANTC 5 cut(s) 16, 75, 216, 646, 653
HpaI GTTAAC 1 cut(s) 550
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 4 cut(s) 223, 550, 610, 657
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 4 cut(s) 326, 332, 338, 650
Hpy8I GTNNAC 4 cut(s) 223, 550, 610, 657
HpyAV CCTTC 3 cut(s) 245, 608, 673
HpyCH4III ACNGT 3 cut(s) 134, 270, 584
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 7 cut(s) 53, 167, 245, 435, 503, 610, 620
HpySE526I ACGT 1 cut(s) 622
Hsp92II CATG 5 cut(s) 82, 428, 547, 592, 644
Ksp22I TGATCA 1 cut(s) 334
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 2 cut(s) 328, 334
LmnI GCTCC 1 cut(s) 579
LpnPI CCDG 9 cut(s) 57, 84, 99, 107, 306, 323, 345, 620, 771
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 318, 759
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 1 cut(s) 584
MalI GATC 2 cut(s) 330, 336
MboI GATC 2 cut(s) 328, 334
MboII GAAGA 3 cut(s) 131, 173, 477
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 6 cut(s) 65, 199, 440, 504, 563, 673
MlyI GAGTC 3 cut(s) 69, 210, 662
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 3 cut(s) 72, 681, 787
MseI TTAA 3 cut(s) 549, 579, 627
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
NdeI CATATG 1 cut(s) 183
NdeII GATC 2 cut(s) 328, 334
NlaIII CATG 5 cut(s) 82, 428, 547, 592, 644
NlaIV GGNNCC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 16, 646
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 3 cut(s) 69, 210, 661
PpsI GAGTC 3 cut(s) 69, 210, 661
Ppu21I YACGTR 1 cut(s) 623
PpuMI RGGWCCY 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 86, 259
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 549, 579, 627
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 328, 334
Sau96I GGNCC 2 cut(s) 86, 259
SchI GAGTC 3 cut(s) 69, 210, 662
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 1 cut(s) 154
SinI GGWCC 2 cut(s) 86, 259
SmlI CTYRAG 2 cut(s) 210, 650
SmoI CTYRAG 2 cut(s) 210, 650
Sse9I AATT 6 cut(s) 65, 199, 440, 504, 563, 673
SsiI CCGC 1 cut(s) 685
SspI AATATT 1 cut(s) 536
SspMI CTAG 2 cut(s) 318, 759
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 3 cut(s) 134, 270, 584
TaiI ACGT 1 cut(s) 625
TaqI TCGA 2 cut(s) 325, 726
TasI AATT 6 cut(s) 65, 199, 440, 504, 563, 673
TfiI GAWTC 2 cut(s) 16, 646
Tru1I TTAA 3 cut(s) 549, 579, 627
Tru9I TTAA 3 cut(s) 549, 579, 627
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 94, 99, 629
VneI GTGCAC 1 cut(s) 608
VpaK11BI GGWCC 2 cut(s) 86, 259
VspI ATTAAT 1 cut(s) 627
XapI RAATTY 3 cut(s) 199, 440, 673
XspI CTAG 2 cut(s) 318, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.