Rh2DG226300

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001262
Physical Location & Seq
Reverse (-)
22306341 .. 22306849
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG226300.1

Sequence Viewer

Length: 318 bp
ATGTTTCTTTCATCTGGGATTCCAGACCTTGACAAAATATTAGGTGGTGGTTTTGCTCTAGGTAGCCTAGTAATGGTGATGGAAGATGCAGAAGCACCTCATCATATGCTTTTACTTAGGAATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTACCCATGCCCAGCCAAGGACCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGCCGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATACAAGAAGTACTTTGGTGAAAATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

105

Amino Acids

11.76

Weight (kDa)

6.39

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 2 - 100 4.2e-33 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 3 cut(s) 202, 222, 299
AfiI CCNNNNNNNGG 3 cut(s) 73, 178, 259
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 2 cut(s) 135, 243
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 88, 317
AvaII GGWCC 1 cut(s) 181
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 203
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 135, 243
BfaI CTAG 4 cut(s) 59, 68, 210, 240
BmcAI AGTACT 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 178, 259
BseDI CCNNGG 1 cut(s) 177
BseLI CCNNNNNNNGG 3 cut(s) 73, 178, 259
BseYI CCCAGC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 73, 178, 259
BsmAI GTCTC 2 cut(s) 135, 243
Bso31I GGTCTC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 135, 243
BstMBI GATC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 3 cut(s) 201, 221, 298
CviAII CATG 2 cut(s) 127, 168
CviJI RGCY 4 cut(s) 66, 176, 218, 281
CviKI_1 RGCY 4 cut(s) 66, 176, 218, 281
CviQI GTAC 3 cut(s) 201, 221, 298
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 130, 171
FaiI YATR 4 cut(s) 105, 107, 128, 169
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 2 cut(s) 126, 167
FauNDI CATATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 256
FspBI CTAG 4 cut(s) 59, 68, 210, 240
GsaI CCCAGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 130, 171
HinfI GANTC 2 cut(s) 19, 138
HphI GGTGA 2 cut(s) 88, 317
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 23, 248, 260
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 130, 171
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 36, 186, 228, 245, 267
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 59, 68, 210, 240
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 95
MluCI AATT 1 cut(s) 121
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 2 cut(s) 108, 267
NdeI CATATG 1 cut(s) 105
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 130, 171
NlaIV GGNNCC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 3 cut(s) 202, 222, 299
RsaNI GTAC 3 cut(s) 201, 221, 298
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 1 cut(s) 132
SetI ASST 5 cut(s) 30, 46, 64, 100, 283
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 1 cut(s) 121
SspI AATATT 1 cut(s) 39
SspMI CTAG 4 cut(s) 59, 68, 210, 240
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 121
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 115, 246
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 121
XspI CTAG 4 cut(s) 59, 68, 210, 240
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.