Rorug06G0054400

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001262
Physical Location & Seq
Reverse (-)
7511349 .. 7513122
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0054400.1

Sequence Viewer

Length: 804 bp
ATGTTTGCGGTGAAGACATGGTGCTCTCACATGGCTTTGTTCTCCTCTGATGCTATTGTCCTTCCCAAGCCTGATACTCCCTGCAAGAGTCACATGAGTGAGCATTATGAGCTGACAGATCATTATCTTGCTATCAGCTGCAGTGATAGACTTCCATTTGTTTGGTGTTACTCCTCCAAGGCAACTGCCGATTTTCATCAAGTGATCCGACGATTGCAGGAGTTTTCTTCATCAAGTGATCCGATGGTTGACGGCCATGATTCATTTGCATTGGCCAAGGAAGGACTTCAGAAAATATTTGATCAGGGGTTAGAAGCTTTAGCTAATGACCAACTGCAAAGAGAGTTTCTCACTTATTCAGCCATACTTCTATCAGCTGATTCCTGCCCATCGGAATTGAAGGCTGACCTTTCATCATTCAGAGGTAATTTCCTAGAGGAAACCTCTGCTTTTATTCAAGCTAGAAATGAGTTGAAGGTGGCCTCAGACCTAGCAGCTTCAATTACTCTGGAGAAGTTTGTCCTCCAGCAAGAGTTTTCCAAGTATTCTGATGCAAAGAAAGAAATTATTGCCTCAGAGGAGAGAATTGACAATCTTAAGGCTACTCTAGCAACAGAAGAGAGCAAGAAGGCAAAGTTCGATGAGGTTTTGGGTTCGATTGAGACTCAAGTAACCTCTGCCAAAGATGGATTGGTCTCGGACTTGGCACAAGTCTCCAGCATGGAGGGAACAATCCAAGCTGCTACCCAGTTAGTATCTCCGGTGTGGAATAGCTTAAGGACAACCTTTACGAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

267

Amino Acids

29.65

Weight (kDa)

4.97

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AclWI GGATC 2 cut(s) 199, 233
AcoI YGGCCR 2 cut(s) 253, 273
AcuI CTGAAG 1 cut(s) 272
AflII CTTAAG 2 cut(s) 596, 775
AgsI TTSAA 4 cut(s) 400, 458, 475, 501
AleI CACNNNNGTG 1 cut(s) 96
AluBI AGCT 9 cut(s) 112, 138, 317, 323, 377, 461, 497, 740, 774
AluI AGCT 9 cut(s) 112, 138, 317, 323, 377, 461, 497, 740, 774
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 656, 700, 718
AlwI GGATC 2 cut(s) 199, 233
AoxI GGCC 3 cut(s) 253, 273, 480
ApeKI GCWGC 3 cut(s) 138, 494, 740
Asp700I GAANNNNTTC 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 22
BalI TGGCCA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 125, 506, 727
BccI CCATC 3 cut(s) 238, 397, 680
BceAI ACGGC 1 cut(s) 268
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 656, 700, 718
BfaI CTAG 4 cut(s) 434, 462, 491, 608
BfmI CTRYAG 1 cut(s) 139
BfrI CTTAAG 2 cut(s) 596, 775
BisI GCNGC 3 cut(s) 139, 495, 741
BlsI GCNGC 3 cut(s) 140, 496, 742
BmrI ACTGGG 1 cut(s) 742
BmsI GCATC 2 cut(s) 40, 541
BmuI ACTGGG 1 cut(s) 742
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 4 cut(s) 333, 365, 428, 460
BpmI CTGGAG 3 cut(s) 509, 530, 700
BpuEI CTTGAG 1 cut(s) 651
BsaBI GATNNNNATC 2 cut(s) 123, 195
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 2 cut(s) 177, 276
BsaWI WCCGGW 1 cut(s) 760
Bse1I ACTGG 1 cut(s) 748
Bse8I GATNNNNATC 2 cut(s) 123, 195
BseDI CCNNGG 2 cut(s) 177, 276
BseJI GATNNNNATC 2 cut(s) 123, 195
BseMII CTCAG 2 cut(s) 498, 588
BseNI ACTGG 1 cut(s) 748
BseRI GAGGAG 3 cut(s) 34, 163, 593
BseXI GCAGC 3 cut(s) 125, 506, 727
BshFI GGCC 3 cut(s) 255, 275, 482
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 656, 700, 718
BsnI GGCC 3 cut(s) 255, 275, 482
Bso31I GGTCTC 1 cut(s) 700
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 118, 204, 238, 301
BspACI CCGC 1 cut(s) 8
BspANI GGCC 3 cut(s) 255, 275, 482
BspCNI CTCAG 2 cut(s) 497, 587
BspMAI CTGCAG 1 cut(s) 143
BspPI GGATC 2 cut(s) 199, 233
BspTI CTTAAG 2 cut(s) 596, 775
BspTNI GGTCTC 1 cut(s) 700
BsrI ACTGG 1 cut(s) 748
BssECI CCNNGG 2 cut(s) 177, 276
BssMI GATC 4 cut(s) 118, 204, 238, 301
BssT1I CCWWGG 2 cut(s) 177, 276
Bst6I CTCTTC 1 cut(s) 612
BstAFI CTTAAG 2 cut(s) 596, 775
BstDEI CTNAG 2 cut(s) 484, 574
BstKTI GATC 4 cut(s) 121, 207, 241, 304
BstMAI GTCTC 3 cut(s) 656, 700, 718
BstMBI GATC 4 cut(s) 118, 204, 238, 301
BstMWI GCNNNNNNNGC 2 cut(s) 109, 608
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 125, 506, 727
BstV2I GAAGAC 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 162
BsuRI GGCC 3 cut(s) 255, 275, 482
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 148
CviAII CATG 6 cut(s) 18, 31, 94, 257, 721, 801
DdeI CTNAG 2 cut(s) 484, 574
DpnI GATC 4 cut(s) 120, 206, 240, 303
DpnII GATC 4 cut(s) 118, 204, 238, 301
EaeI YGGCCR 2 cut(s) 253, 273
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 177, 276
Eco31I GGTCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 177, 276
ErhI CCWWGG 2 cut(s) 177, 276
FaeI CATG 6 cut(s) 21, 34, 97, 260, 724, 804
FaiI YATR 8 cut(s) 19, 32, 95, 108, 258, 365, 722, 802
FatI CATG 6 cut(s) 17, 30, 93, 256, 720, 800
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 139, 495, 741
Fsp4HI GCNGC 3 cut(s) 139, 495, 741
FspBI CTAG 4 cut(s) 434, 462, 491, 608
GluI GCNGC 3 cut(s) 139, 495, 741
GsuI CTGGAG 3 cut(s) 509, 530, 700
HaeIII GGCC 3 cut(s) 255, 275, 482
HapII CCGG 1 cut(s) 761
Hin1II CATG 6 cut(s) 21, 34, 97, 260, 724, 804
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 4 cut(s) 88, 260, 380, 664
HpaII CCGG 1 cut(s) 761
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 5 cut(s) 71, 275, 394, 469, 622
HpyCH4V TGCA 7 cut(s) 84, 141, 217, 269, 337, 554, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 608
HpyF3I CTNAG 2 cut(s) 484, 574
Hsp92II CATG 6 cut(s) 21, 34, 97, 260, 724, 804
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 4 cut(s) 118, 204, 238, 301
Lsp1109I GCAGC 3 cut(s) 125, 506, 727
LweI GCATC 2 cut(s) 40, 541
MaeI CTAG 4 cut(s) 434, 462, 491, 608
MaeIII GTNAC 3 cut(s) 89, 167, 670
MalI GATC 4 cut(s) 120, 206, 240, 303
MboI GATC 4 cut(s) 118, 204, 238, 301
MboII GAAGA 3 cut(s) 25, 219, 629
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 5 cut(s) 395, 427, 501, 564, 585
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 97, 658
MmeI TCCRAC 1 cut(s) 232
Mox20I TGGCCA 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 597, 776
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 2 cut(s) 138, 377
MspCI CTTAAG 2 cut(s) 596, 775
MspI CCGG 1 cut(s) 761
MwoI GCNNNNNNNGC 2 cut(s) 109, 608
NdeII GATC 4 cut(s) 118, 204, 238, 301
NlaIII CATG 6 cut(s) 21, 34, 97, 260, 724, 804
NmuCI GTSAC 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 260, 380
PkrI GCNGC 3 cut(s) 140, 496, 742
PleI GAGTC 2 cut(s) 96, 658
PpsI GAGTC 2 cut(s) 96, 658
PstI CTGCAG 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 138, 377
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 597, 776
SatI GCNGC 3 cut(s) 139, 495, 741
Sau3AI GATC 4 cut(s) 118, 204, 238, 301
SchI GAGTC 2 cut(s) 97, 658
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 2 cut(s) 40, 541
SfcI CTRYAG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 3 cut(s) 596, 666, 775
SmoI CTYRAG 3 cut(s) 596, 666, 775
Sse9I AATT 5 cut(s) 395, 427, 501, 564, 585
SsiI CCGC 1 cut(s) 8
SspI AATATT 1 cut(s) 297
SspMI CTAG 4 cut(s) 434, 462, 491, 608
StyI CCWWGG 2 cut(s) 177, 276
TaqI TCGA 2 cut(s) 639, 656
TasI AATT 5 cut(s) 395, 427, 501, 564, 585
TfiI GAWTC 2 cut(s) 260, 380
Tru1I TTAA 2 cut(s) 597, 776
Tru9I TTAA 2 cut(s) 597, 776
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 3 cut(s) 138, 494, 740
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 185, 219, 252, 402
TspRI CASTG 1 cut(s) 148
Vha464I CTTAAG 2 cut(s) 596, 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 4 cut(s) 434, 462, 491, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.