Rh2DG226700

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001262
Physical Location & Seq
Reverse (-)
22343533 .. 22362120
18588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG226700.1

Sequence Viewer

Length: 441 bp
ATGCGAGTGTATCCCATTTCTTCCTGCACCGGGAAGCACAACGGCGACATCATGCACCCCGGAAGGCCGGAGCTGGCCGAACGGCGTAGCAAAACCCCAAAAAGTGACAGCAACATTTCTTGTGTTGGTCGTATTGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAAGTATGCTACGATCTTCAAATGCAGTTGTTGTTGTGACATTTCCACCTAGTCTTCTTTCATCATCCTCCTCTATAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCCGATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAAAAAGTAGCGCAGATTAACACACAAGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

146

Amino Acids

16.07

Weight (kDa)

8.76

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 31 - 145 7.1e-28 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 164, 385
AcoI YGGCCR 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 164
AfiI CCNNNNNNNGG 4 cut(s) 30, 164, 184, 385
AgsI TTSAA 2 cut(s) 143, 234
AjnI CCWGG 2 cut(s) 177, 378
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw21I GWGCWC 1 cut(s) 157
AoxI GGCC 3 cut(s) 65, 75, 391
ApeKI GCWGC 1 cut(s) 298
AspLEI GCGC 1 cut(s) 418
AsuC2I CCSGG 2 cut(s) 31, 60
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 288
BceAI ACGGC 2 cut(s) 58, 98
BciT130I CCWGG 2 cut(s) 179, 380
BciVI GTATCC 1 cut(s) 21
BcnI CCSGG 2 cut(s) 31, 60
BfaI CTAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 21
BglII AGATCT 1 cut(s) 206
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
Bme1390I CCNGG 4 cut(s) 31, 60, 179, 380
BmrFI CCNGG 4 cut(s) 31, 60, 179, 380
BpiI GAAGAC 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 31, 60
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 164, 184, 385
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 2 cut(s) 179, 380
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 4 cut(s) 30, 164, 184, 385
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 10
BshFI GGCC 3 cut(s) 67, 77, 393
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 30, 60, 68
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 4 cut(s) 30, 164, 184, 385
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 3 cut(s) 67, 77, 393
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 206, 227
BspANI GGCC 3 cut(s) 67, 77, 393
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 206, 227
Bst2UI CCWGG 2 cut(s) 179, 380
Bst4CI ACNGT 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 203
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 278
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 2 cut(s) 209, 230
BstMBI GATC 2 cut(s) 206, 227
BstNI CCWGG 2 cut(s) 179, 380
BstNSI RCATGY 1 cut(s) 193
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 4 cut(s) 29, 58, 177, 378
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 3 cut(s) 67, 77, 393
BtsCI GGATG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 418
CviAII CATG 4 cut(s) 52, 190, 304, 385
CviJI RGCY 5 cut(s) 67, 73, 77, 177, 393
CviKI_1 RGCY 5 cut(s) 67, 73, 77, 177, 393
DdeI CTNAG 1 cut(s) 203
DpnI GATC 2 cut(s) 208, 229
DpnII GATC 2 cut(s) 206, 227
DraIII CACNNNGTG 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 177, 378
FaeI CATG 4 cut(s) 55, 193, 307, 388
FaiI YATR 6 cut(s) 53, 191, 221, 290, 305, 386
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 51, 189, 303, 384
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 299
HaeIII GGCC 3 cut(s) 67, 77, 393
HapII CCGG 3 cut(s) 30, 60, 68
HhaI GCGC 1 cut(s) 418
Hin1II CATG 4 cut(s) 55, 193, 307, 388
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HpaII CCGG 3 cut(s) 30, 60, 68
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 57, 208, 404
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 27, 55, 239, 406
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 4 cut(s) 55, 193, 307, 388
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 2 cut(s) 206, 227
LmnI GCTCC 3 cut(s) 70, 160, 369
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 104, 250, 374
MalI GATC 2 cut(s) 208, 229
MboI GATC 2 cut(s) 206, 227
MboII GAAGA 3 cut(s) 12, 222, 260
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 333, 353
MnlI CCTC 3 cut(s) 292, 295, 337
MseI TTAA 3 cut(s) 327, 399, 423
MspI CCGG 3 cut(s) 30, 60, 68
MspR9I CCNGG 4 cut(s) 31, 60, 179, 380
MvaI CCWGG 2 cut(s) 179, 380
NciI CCSGG 2 cut(s) 31, 60
NdeII GATC 2 cut(s) 206, 227
NlaIII CATG 4 cut(s) 55, 193, 307, 388
NmuCI GTSAC 2 cut(s) 104, 250
NspI RCATGY 1 cut(s) 193
PflMI CCANNNNNTGG 2 cut(s) 164, 385
PkrI GCNGC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 177, 378
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 2 cut(s) 177, 378
PsuI RGATCY 1 cut(s) 206
SaqAI TTAA 3 cut(s) 327, 399, 423
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 2 cut(s) 206, 227
ScrFI CCNGG 4 cut(s) 31, 60, 179, 380
SduI GDGCHC 1 cut(s) 157
SetI ASST 3 cut(s) 75, 265, 317
Sse9I AATT 2 cut(s) 333, 353
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 4 cut(s) 29, 58, 177, 378
TaaI ACNGT 1 cut(s) 162
TasI AATT 2 cut(s) 333, 353
Tru1I TTAA 3 cut(s) 327, 399, 423
Tru9I TTAA 3 cut(s) 327, 399, 423
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 2 cut(s) 104, 250
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 2 cut(s) 104, 250
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 1 cut(s) 167
Van91I CCANNNNNTGG 2 cut(s) 164, 385
XceI RCATGY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.