Rh6BG177100

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001262
Physical Location & Seq
Forward (+)
30041445 .. 30095261
53817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG177100.1

Sequence Viewer

Length: 951 bp
ATGGCTGCGATCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTCGGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGATCCAATGGCACAATGTTTGTTTCATTTGGGATTCCAGACCTTGACAAAATTTTAGGTGGTGGTTTTGCTCTAGGAAGCCTAGTAATGGTGATGGAAGATGCAGAAGCACCTCATCATATGCTTTTACTTAGGAATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGCGGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATACAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAATGGGAAACATGAGTTCAGCAACAACTTCGACTTGCGGAAGCCCTTGGAGAGGCAGTTTCTTACAGGCAAGCGAATAGATTGTGCTAGCATTCTTGATTCTCCAAATCTTGTCACACTTTATGATCGTTGTGCTACATTTTTATCACAATTTCCAAGAAGTGACAGCAACATTTCTTGTGTTGGTCGTATTGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAAGCATGCTACGATCTTCAAATGCAGTTGCAGTTGTGACATTTCCGCCTAGTCTTCTTTCATCATCCTCCTCTACAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCAGATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGTGCAAATTAACACACAGGTAGTGCAAAAGTTTGCTTCACCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

316

Amino Acids

34.93

Weight (kDa)

8.9

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 21 - 310 4.7e-80 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 2 cut(s) 653, 874
AciI CCGC 3 cut(s) 317, 469, 749
AclWI GGATC 2 cut(s) 81, 94
AcsI RAATTY 2 cut(s) 135, 220
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 301, 321
AfiI CCNNNNNNNGG 7 cut(s) 172, 277, 358, 483, 653, 673, 874
AgsI TTSAA 2 cut(s) 632, 723
AjnI CCWGG 3 cut(s) 70, 666, 867
AluBI AGCT 3 cut(s) 30, 57, 380
AluI AGCT 3 cut(s) 30, 57, 380
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 234, 342
AlwI GGATC 2 cut(s) 81, 94
AoxI GGCC 1 cut(s) 880
ApeKI GCWGC 2 cut(s) 5, 787
ApoI RAATTY 2 cut(s) 135, 220
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 4 cut(s) 51, 187, 416, 933
AsuNHI GCTAGC 1 cut(s) 518
AvaII GGWCC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 799
BccI CCATC 2 cut(s) 172, 777
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 3 cut(s) 72, 668, 869
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 234, 342
BfaI CTAG 7 cut(s) 18, 158, 167, 309, 339, 519, 753
BglII AGATCT 1 cut(s) 695
BisI GCNGC 2 cut(s) 6, 788
BlsI GCNGC 2 cut(s) 7, 789
Bme1390I CCNGG 3 cut(s) 72, 668, 869
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 3 cut(s) 88, 282, 321
BmrFI CCNGG 3 cut(s) 72, 668, 869
BmsI GCATC 1 cut(s) 175
BmtI GCTAGC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 749
BpuEI CTTGAG 2 cut(s) 62, 216
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 70, 276, 477
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 473, 503
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 277, 358, 483, 653, 673, 874
Bse1I ACTGG 1 cut(s) 865
BseBI CCWGG 3 cut(s) 72, 668, 869
BseDI CCNNGG 3 cut(s) 70, 276, 477
BseGI GGATG 1 cut(s) 767
BseLI CCNNNNNNNGG 7 cut(s) 172, 277, 358, 483, 653, 673, 874
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 1 cut(s) 763
BseXI GCAGC 1 cut(s) 799
BseYI CCCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 1 cut(s) 882
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 646
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 7 cut(s) 172, 277, 358, 483, 653, 673, 874
BsmAI GTCTC 2 cut(s) 234, 342
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 1 cut(s) 882
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 6 cut(s) 9, 86, 355, 556, 695, 716
BspACI CCGC 3 cut(s) 317, 469, 749
BspANI GGCC 1 cut(s) 882
BspLI GGNNCC 3 cut(s) 88, 282, 321
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 2 cut(s) 81, 94
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 865
BssECI CCNNGG 3 cut(s) 70, 276, 477
BssMI GATC 6 cut(s) 9, 86, 355, 556, 695, 716
BssT1I CCWWGG 2 cut(s) 276, 477
Bst2UI CCWGG 3 cut(s) 72, 668, 869
Bst4CI ACNGT 2 cut(s) 291, 651
BstC8I GCNNGC 5 cut(s) 55, 268, 503, 520, 710
BstDEI CTNAG 2 cut(s) 215, 692
BstEII GGTNACC 1 cut(s) 863
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 1 cut(s) 767
BstKTI GATC 6 cut(s) 12, 89, 358, 559, 698, 719
BstMAI GTCTC 2 cut(s) 234, 342
BstMBI GATC 6 cut(s) 9, 86, 355, 556, 695, 716
BstMWI GCNNNNNNNGC 2 cut(s) 36, 272
BstNI CCWGG 3 cut(s) 72, 668, 869
BstNSI RCATGY 2 cut(s) 682, 712
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 3 cut(s) 70, 666, 867
BstV1I GCAGC 1 cut(s) 799
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 2 cut(s) 86, 695
BstYI RGATCY 2 cut(s) 86, 695
BsuRI GGCC 1 cut(s) 882
BtsCI GGATG 1 cut(s) 767
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 5 cut(s) 55, 268, 503, 520, 710
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 300, 320
CviAII CATG 7 cut(s) 83, 226, 443, 679, 709, 793, 874
CviQI GTAC 2 cut(s) 300, 320
DdeI CTNAG 2 cut(s) 215, 692
DpnI GATC 6 cut(s) 11, 88, 357, 558, 697, 718
DpnII GATC 6 cut(s) 9, 86, 355, 556, 695, 716
DraIII CACNNNGTG 1 cut(s) 653
EciI GGCGGA 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 276, 477
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 280
Eco91I GGTNACC 1 cut(s) 863
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 3 cut(s) 70, 666, 867
EcoT14I CCWWGG 2 cut(s) 276, 477
ErhI CCWWGG 2 cut(s) 276, 477
FaeI CATG 7 cut(s) 86, 229, 446, 682, 712, 796, 877
FaqI GGGAC 1 cut(s) 689
FatI CATG 7 cut(s) 82, 225, 442, 678, 708, 792, 873
FauNDI CATATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 6, 788
FokI GGATG 1 cut(s) 754
Fsp4HI GCNGC 2 cut(s) 6, 788
FspBI CTAG 7 cut(s) 18, 158, 167, 309, 339, 519, 753
GluI GCNGC 2 cut(s) 6, 788
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 882
Hin1II CATG 7 cut(s) 86, 229, 446, 682, 712, 796, 877
HinfI GANTC 4 cut(s) 75, 118, 237, 530
HphI GGTGA 4 cut(s) 51, 187, 416, 933
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 6 cut(s) 13, 122, 347, 359, 527, 827
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 3 cut(s) 266, 697, 893
HpyCH4III ACNGT 2 cut(s) 291, 651
HpyCH4V TGCA 8 cut(s) 53, 188, 266, 728, 734, 895, 907, 928
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 272
HpyF3I CTNAG 2 cut(s) 215, 692
Hsp92II CATG 7 cut(s) 86, 229, 446, 682, 712, 796, 877
KpnI GGTACC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 6 cut(s) 9, 86, 355, 556, 695, 716
LmnI GCTCC 2 cut(s) 649, 858
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 1 cut(s) 175
MaeI CTAG 7 cut(s) 18, 158, 167, 309, 339, 519, 753
MaeIII GTNAC 4 cut(s) 544, 593, 739, 863
MalI GATC 6 cut(s) 11, 88, 357, 558, 697, 718
MboI GATC 6 cut(s) 9, 86, 355, 556, 695, 716
MboII GAAGA 3 cut(s) 194, 711, 749
MflI RGATCY 2 cut(s) 86, 695
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 6 cut(s) 135, 220, 581, 822, 842, 909
MlyI GAGTC 2 cut(s) 69, 231
MnlI CCTC 7 cut(s) 72, 207, 366, 477, 781, 784, 826
MseI TTAA 3 cut(s) 816, 888, 912
MslI CAYNNNNRTG 1 cut(s) 946
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 3 cut(s) 72, 668, 869
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 3 cut(s) 72, 668, 869
MwoI GCNNNNNNNGC 2 cut(s) 36, 272
NdeI CATATG 1 cut(s) 204
NdeII GATC 6 cut(s) 9, 86, 355, 556, 695, 716
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 7 cut(s) 86, 229, 446, 682, 712, 796, 877
NlaIV GGNNCC 3 cut(s) 88, 282, 321
NmuCI GTSAC 3 cut(s) 544, 593, 739
NspI RCATGY 2 cut(s) 682, 712
PaeI GCATGC 1 cut(s) 712
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 118, 530
PflMI CCANNNNNTGG 2 cut(s) 653, 874
PkrI GCNGC 2 cut(s) 7, 789
PleI GAGTC 2 cut(s) 69, 231
PpsI GAGTC 2 cut(s) 69, 231
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 3 cut(s) 70, 666, 867
PspEI GGTNACC 1 cut(s) 863
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 3 cut(s) 70, 666, 867
PspN4I GGNNCC 3 cut(s) 88, 282, 321
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 2 cut(s) 86, 695
RsaI GTAC 2 cut(s) 301, 321
RsaNI GTAC 2 cut(s) 300, 320
RseI CAYNNNNRTG 1 cut(s) 946
SaqAI TTAA 3 cut(s) 816, 888, 912
SatI GCNGC 2 cut(s) 6, 788
Sau3AI GATC 6 cut(s) 9, 86, 355, 556, 695, 716
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 2 cut(s) 69, 231
ScrFI CCNGG 3 cut(s) 72, 668, 869
SduI GDGCHC 1 cut(s) 646
SetI ASST 9 cut(s) 32, 59, 64, 129, 145, 199, 382, 806, 924
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 946
SmlI CTYRAG 2 cut(s) 77, 231
SmoI CTYRAG 2 cut(s) 77, 231
SphI GCATGC 1 cut(s) 712
Sse9I AATT 6 cut(s) 135, 220, 581, 822, 842, 909
SsiI CCGC 3 cut(s) 317, 469, 749
SspMI CTAG 7 cut(s) 18, 158, 167, 309, 339, 519, 753
StyD4I CCNGG 3 cut(s) 70, 666, 867
StyI CCWWGG 2 cut(s) 276, 477
TaaI ACNGT 2 cut(s) 291, 651
TaqI TCGA 2 cut(s) 346, 462
TasI AATT 6 cut(s) 135, 220, 581, 822, 842, 909
TfiI GAWTC 2 cut(s) 118, 530
Tru1I TTAA 3 cut(s) 816, 888, 912
Tru9I TTAA 3 cut(s) 816, 888, 912
TscAI CASTG 1 cut(s) 656
TseFI GTSAC 3 cut(s) 544, 593, 739
TseI GCWGC 2 cut(s) 5, 787
Tsp45I GTSAC 3 cut(s) 544, 593, 739
TspDTI ATGAA 4 cut(s) 99, 214, 345, 753
TspRI CASTG 1 cut(s) 656
Van91I CCANNNNNTGG 2 cut(s) 653, 874
VpaK11BI GGWCC 1 cut(s) 280
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 2 cut(s) 135, 220
XceI RCATGY 2 cut(s) 682, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XspI CTAG 7 cut(s) 18, 158, 167, 309, 339, 519, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.