pycom01g06960

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001262
Physical Location & Seq
Forward (+)
7558694 .. 7561567
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06960.5

Sequence Viewer

Length: 1086 bp
ATGTCTGCGACCAAGATACGGACAAGTAGCTTCTCTCGGAACTTTCTGGCTGCAAACTCACACCAAATCCCTGGACTAAAGCATGGTCCCAATGGCACAATGTTTATTTCATCAGGGATACCAGACCTTGACAAGATTTTAGGTGGTGGGTTTTCTCTAGGAAGCCTAGTTATGGTGATGGAAGATGCAGAAGCACCCCATCATATGCTTTTGCTTAGGAGTTTTATGTCTCAAGGACTCGTCCACAACCAACCCCTTCTCTATGCAAGCCCATCCAAGGAACCCCGGCAATTTCTTGGTACTTTGCCTAGCCCAGCGGTACCCAAAGATGACAAGTCTAGTCATCGAGATCCTGATGAGGAGAAAGGGTTGAGGATAGCTTGGCAATATAAAAAGTATTTTGGTGAAAATCAACAGAGTGTTGATAGAGATGGAAAACATGAGTTCTGCAATGAGTTTGACTTGCGGAAGCCCTTAGAAAGGAAATTTTTAAGCGGCAAGCGTATAGATTGCGTTAGCATTCAAGATTCTCCAAATCTGATTACCCTTCATGACCGTTGTGCAACCTTTTTATCTCAATTTCCAAGAAGTGATGGCAGCATTTCTTCCGTTGGTCGTATTGCAATTCAATCATTCTGTGCTCCACAGTGTGAATATACCGACATGGAATGGGACATGCTTTCCTTTCTTAGATCTCTAAGAGCCATGGTCAGATCTTCAAATGCAGTTGCTGTTGTGACATTTCCACCTAGTCTTCTTTTGCCATCCTTCTCTATAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTCAAAGCAATTCCAGACGAGGACAAGGAATTGGAAAAGCTCCTTACTGGTTACCAGGACATGGTAGGGCTTCTCAATGTGCACAAGGTAGCACAGATTAACACACAGGTTCCTGTGATCCTTGAGGCAACAACGTACTCAATGAAGTTGAAAAGGCGGAGGTTTATGGTTTTAGAATGTCTAAACCAAGCCCCAATCGATGGTTCAAGTGGGAGTTCGTATGGCACTTCGGGTAGTTGTTCTGTCTCCTCCAAAACTGGGGCTCTTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

362

Amino Acids

40.1

Weight (kDa)

8.11

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 2 cut(s) 871, 1010
AciI CCGC 4 cut(s) 317, 466, 495, 967
AclWI GGATC 2 cut(s) 344, 922
AcsI RAATTY 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 3 cut(s) 301, 321, 947
AfiI CCNNNNNNNGG 7 cut(s) 18, 172, 277, 480, 871, 1010, 1068
AgsI TTSAA 5 cut(s) 524, 629, 720, 961, 1017
AjnI CCWGG 2 cut(s) 70, 864
AjuI GAANNNNNNNTTGG 2 cut(s) 997, 1029
AluBI AGCT 3 cut(s) 30, 380, 850
AluI AGCT 3 cut(s) 30, 380, 850
Alw21I GWGCWC 2 cut(s) 643, 894
Alw26I GTCTC 2 cut(s) 234, 1060
Alw44I GTGCAC 1 cut(s) 890
AlwI GGATC 2 cut(s) 344, 922
AlwNI CAGNNNCTG 1 cut(s) 731
ApaLI GTGCAC 1 cut(s) 890
ApeKI GCWGC 3 cut(s) 50, 597, 784
ApoI RAATTY 1 cut(s) 485
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 187, 416
AvaII GGWCC 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 894
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 1075
BbsI GAAGAC 1 cut(s) 746
Bbv12I GWGCWC 2 cut(s) 643, 894
BbvI GCAGC 3 cut(s) 37, 609, 796
BccI CCATC 8 cut(s) 172, 207, 280, 425, 587, 772, 774, 1004
BciT130I CCWGG 2 cut(s) 72, 866
BciVI GTATCC 1 cut(s) 111
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 234, 1060
BfaI CTAG 5 cut(s) 158, 167, 309, 339, 750
BfuI GTATCC 1 cut(s) 111
BglII AGATCT 2 cut(s) 692, 713
BisI GCNGC 4 cut(s) 51, 496, 598, 785
BlsI GCNGC 4 cut(s) 52, 497, 599, 786
Bme1390I CCNGG 3 cut(s) 72, 286, 866
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 4 cut(s) 88, 282, 321, 921
BmrFI CCNGG 3 cut(s) 72, 286, 866
BmrI ACTGGG 1 cut(s) 1077
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 1077
BpiI GAAGAC 1 cut(s) 746
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 216, 953
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 1008
BsaJI CCNNGG 4 cut(s) 70, 276, 284, 705
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 7 cut(s) 18, 172, 277, 480, 871, 1010, 1068
Bse1I ACTGG 2 cut(s) 862, 1072
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 2 cut(s) 72, 866
BseCI ATCGAT 1 cut(s) 1008
BseDI CCNNGG 4 cut(s) 70, 276, 284, 705
BseGI GGATG 2 cut(s) 272, 764
BseLI CCNNNNNNNGG 7 cut(s) 18, 172, 277, 480, 871, 1010, 1068
BseMI GCAATG 1 cut(s) 457
BseNI ACTGG 2 cut(s) 862, 1072
BseRI GAGGAG 2 cut(s) 374, 1048
BseSI GKGCMC 1 cut(s) 894
BseXI GCAGC 3 cut(s) 37, 609, 796
BseYI CCCAGC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 1008
BsiHKAI GWGCWC 2 cut(s) 643, 894
BsiSI CCGG 1 cut(s) 286
BslFI GGGAC 2 cut(s) 72, 686
BslI CCNNNNNNNGG 7 cut(s) 18, 172, 277, 480, 871, 1010, 1068
BsmAI GTCTC 2 cut(s) 234, 1060
BsmFI GGGAC 2 cut(s) 72, 686
BsmI GAATGC 1 cut(s) 519
Bsp1286I GDGCHC 3 cut(s) 643, 894, 1075
Bsp143I GATC 4 cut(s) 349, 692, 713, 927
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 4 cut(s) 317, 466, 495, 967
BspDI ATCGAT 1 cut(s) 1008
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 4 cut(s) 88, 282, 321, 921
BspPI GGATC 2 cut(s) 344, 922
BspT107I GGYRCC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 2 cut(s) 862, 1072
BssECI CCNNGG 4 cut(s) 70, 276, 284, 705
BssMI GATC 4 cut(s) 349, 692, 713, 927
BssT1I CCWWGG 2 cut(s) 276, 705
Bst2UI CCWGG 2 cut(s) 72, 866
Bst4CI ACNGT 2 cut(s) 557, 648
BstC8I GCNNGC 2 cut(s) 268, 500
BstDEI CTNAG 4 cut(s) 215, 475, 689, 698
BstDSI CCRYGG 1 cut(s) 705
BstEII GGTNACC 1 cut(s) 860
BstENI CCTNNNNNAGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 272, 764
BstKTI GATC 4 cut(s) 352, 695, 716, 930
BstMAI GTCTC 2 cut(s) 234, 1060
BstMBI GATC 4 cut(s) 349, 692, 713, 927
BstNI CCWGG 2 cut(s) 72, 866
BstNSI RCATGY 1 cut(s) 679
BstPI GGTNACC 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 70, 284, 864
BstSLI GKGCMC 1 cut(s) 894
BstV1I GCAGC 3 cut(s) 37, 609, 796
BstV2I GAAGAC 1 cut(s) 746
BstX2I RGATCY 3 cut(s) 349, 692, 713
BstXI CCANNNNNNTGG 1 cut(s) 71
BstYI RGATCY 3 cut(s) 349, 692, 713
Bsu15I ATCGAT 1 cut(s) 1008
BsuI GTATCC 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 1008
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 2 cut(s) 272, 764
BtsIMutI CAGTG 1 cut(s) 653
Cac8I GCNNGC 2 cut(s) 268, 500
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 1008
Csp6I GTAC 3 cut(s) 300, 320, 946
CviAII CATG 8 cut(s) 83, 440, 551, 664, 676, 706, 790, 871
CviQI GTAC 3 cut(s) 300, 320, 946
DdeI CTNAG 4 cut(s) 215, 475, 689, 698
DpnI GATC 4 cut(s) 351, 694, 715, 929
DpnII GATC 4 cut(s) 349, 692, 713, 927
DraIII CACNNNGTG 1 cut(s) 650
EciI GGCGGA 1 cut(s) 982
Eco130I CCWWGG 2 cut(s) 276, 705
Eco24I GRGCYC 1 cut(s) 1075
Eco47I GGWCC 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 860
EcoNI CCTNNNNNAGG 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 860
EcoRII CCWGG 2 cut(s) 70, 864
EcoT14I CCWWGG 2 cut(s) 276, 705
EcoT38I GRGCYC 1 cut(s) 1075
ErhI CCWWGG 2 cut(s) 276, 705
FaeI CATG 8 cut(s) 86, 443, 554, 667, 679, 709, 793, 874
FaqI GGGAC 2 cut(s) 72, 686
FatI CATG 8 cut(s) 82, 439, 550, 663, 675, 705, 789, 870
FauNDI CATATG 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 51, 496, 598, 785
FokI GGATG 2 cut(s) 259, 751
FriOI GRGCYC 1 cut(s) 1075
Fsp4HI GCNGC 4 cut(s) 51, 496, 598, 785
FspBI CTAG 5 cut(s) 158, 167, 309, 339, 750
GluI GCNGC 4 cut(s) 51, 496, 598, 785
GsaI CCCAGC 1 cut(s) 317
HapII CCGG 1 cut(s) 286
Hin1II CATG 8 cut(s) 86, 443, 554, 667, 679, 709, 793, 874
HinfI GANTC 2 cut(s) 237, 527
HpaII CCGG 1 cut(s) 286
HphI GGTGA 2 cut(s) 187, 416
Hpy166II GTNNAC 2 cut(s) 244, 892
Hpy188I TCNGA 3 cut(s) 39, 540, 713
Hpy188III TCNNGA 6 cut(s) 347, 353, 524, 551, 824, 1076
Hpy8I GTNNAC 2 cut(s) 244, 892
HpyAV CCTTC 3 cut(s) 266, 557, 778
HpyCH4III ACNGT 2 cut(s) 557, 648
HpyCH4IV ACGT 1 cut(s) 944
HpyCH4V TGCA 8 cut(s) 53, 188, 266, 450, 563, 623, 725, 892
HpyF3I CTNAG 4 cut(s) 215, 475, 689, 698
HpySE526I ACGT 1 cut(s) 944
Hsp92II CATG 8 cut(s) 86, 443, 554, 667, 679, 709, 793, 874
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 4 cut(s) 349, 692, 713, 927
LmnI GCTCC 2 cut(s) 646, 855
Lsp1109I GCAGC 3 cut(s) 37, 609, 796
LweI GCATC 1 cut(s) 175
MaeI CTAG 5 cut(s) 158, 167, 309, 339, 750
MaeII ACGT 1 cut(s) 944
MaeIII GTNAC 2 cut(s) 736, 860
MalI GATC 4 cut(s) 351, 694, 715, 929
MboI GATC 4 cut(s) 349, 692, 713, 927
MboII GAAGA 4 cut(s) 194, 597, 708, 746
MflI RGATCY 3 cut(s) 349, 692, 713
MhlI GDGCHC 3 cut(s) 643, 894, 1075
MluCI AATT 6 cut(s) 290, 485, 578, 624, 819, 839
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 6 cut(s) 352, 366, 823, 928, 963, 1069
MseI TTAA 3 cut(s) 491, 909, 1084
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 3 cut(s) 72, 286, 866
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 2 cut(s) 72, 866
NciI CCSGG 1 cut(s) 286
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 204
NdeII GATC 4 cut(s) 349, 692, 713, 927
NlaIII CATG 8 cut(s) 86, 443, 554, 667, 679, 709, 793, 874
NlaIV GGNNCC 4 cut(s) 88, 282, 321, 921
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 1 cut(s) 679
PagI TCATGA 1 cut(s) 550
PctI GAATGC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 2 cut(s) 871, 1010
PkrI GCNGC 4 cut(s) 52, 497, 599, 786
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 70, 864
PspEI GGTNACC 1 cut(s) 860
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 2 cut(s) 70, 864
PspN4I GGNNCC 4 cut(s) 88, 282, 321, 921
PspPI GGNCC 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 3 cut(s) 349, 692, 713
RsaI GTAC 3 cut(s) 301, 321, 947
RsaNI GTAC 3 cut(s) 300, 320, 946
SaqAI TTAA 3 cut(s) 491, 909, 1084
SatI GCNGC 4 cut(s) 51, 496, 598, 785
Sau3AI GATC 4 cut(s) 349, 692, 713, 927
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 3 cut(s) 72, 286, 866
SduI GDGCHC 3 cut(s) 643, 894, 1075
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 231, 932
SmoI CTYRAG 2 cut(s) 231, 932
Sse9I AATT 6 cut(s) 290, 485, 578, 624, 819, 839
SsiI CCGC 4 cut(s) 317, 466, 495, 967
SspMI CTAG 5 cut(s) 158, 167, 309, 339, 750
StyD4I CCNGG 3 cut(s) 70, 284, 864
StyI CCWWGG 2 cut(s) 276, 705
TaaI ACNGT 2 cut(s) 557, 648
TaiI ACGT 1 cut(s) 947
TaqI TCGA 2 cut(s) 346, 1008
TasI AATT 6 cut(s) 290, 485, 578, 624, 819, 839
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 3 cut(s) 491, 909, 1084
Tru9I TTAA 3 cut(s) 491, 909, 1084
TscAI CASTG 1 cut(s) 653
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 3 cut(s) 50, 597, 784
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 3 cut(s) 99, 539, 968
TspGWI ACGGA 2 cut(s) 34, 598
TspRI CASTG 1 cut(s) 653
Van91I CCANNNNNTGG 2 cut(s) 871, 1010
VneI GTGCAC 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 478
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 679
XspI CTAG 5 cut(s) 158, 167, 309, 339, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.