RLG00000017826

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001262
Physical Location & Seq
Reverse (-)
21749859 .. 21750841
983 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017826

Sequence Viewer

Length: 372 bp
ATGGCTGGACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTCGGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATTGGACAATGTTTGTGTCAATTGGGATTCCACACCTTGACAGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAACCATGCTACGATATTCAAATGCAGTTGCTGTTGTGACATTTTCGCCTAGTCTTCTTTCATCCTCCTCCTCTATAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCAGATGAGGACAAGGAATTGGCAACGCTCCTTAGTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

124

Amino Acids

13.53

Weight (kDa)

7.83

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 44 - 123 4.9e-17 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AfiI CCNNNNNNNGG 2 cut(s) 17, 337
AgsI TTSAA 1 cut(s) 186
AjnI CCWGG 2 cut(s) 69, 330
AluBI AGCT 2 cut(s) 29, 56
AluI AGCT 2 cut(s) 29, 56
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 8, 85
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 2 cut(s) 8, 85
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 2 cut(s) 71, 332
BfaI CTAG 2 cut(s) 17, 216
BglII AGATCT 1 cut(s) 158
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 71, 332
Bme18I GGWCC 2 cut(s) 8, 85
BmgT120I GGNCC 2 cut(s) 8, 85
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 2 cut(s) 71, 332
BpiI GAAGAC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 337
BseBI CCWGG 2 cut(s) 71, 332
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 17, 337
BseRI GAGGAG 2 cut(s) 223, 226
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 17, 337
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 158
BspANI GGCC 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 71, 332
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 155, 320
BstEII GGTNACC 1 cut(s) 326
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 71, 332
BstNSI RCATGY 1 cut(s) 145
BstPI GGTNACC 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 69, 330
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 8, 85
CviAII CATG 5 cut(s) 82, 142, 172, 256, 337
CviJI RGCY 4 cut(s) 5, 29, 56, 345
CviKI_1 RGCY 4 cut(s) 5, 29, 56, 345
DdeI CTNAG 2 cut(s) 155, 320
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 8, 85
Eco91I GGTNACC 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 69, 330
FaeI CATG 5 cut(s) 85, 145, 175, 259, 340
FaiI YATR 6 cut(s) 83, 143, 173, 242, 257, 338
FaqI GGGAC 1 cut(s) 152
FatI CATG 5 cut(s) 81, 141, 171, 255, 336
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 2 cut(s) 17, 216
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 1 cut(s) 345
Hin1II CATG 5 cut(s) 85, 145, 175, 259, 340
HinfI GANTC 2 cut(s) 74, 117
HphI GGTGA 1 cut(s) 50
Hpy188III TCNNGA 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 160, 356
HpyCH4V TGCA 3 cut(s) 52, 191, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 155, 320
Hsp92II CATG 5 cut(s) 85, 145, 175, 259, 340
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 56, 83, 303, 317, 344
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 2 cut(s) 17, 216
MaeIII GTNAC 2 cut(s) 202, 326
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 212
MfeI CAATTG 2 cut(s) 90, 110
MflI RGATCY 1 cut(s) 158
MluCI AATT 4 cut(s) 90, 110, 285, 305
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 71, 241, 244, 247, 289
MseI TTAA 2 cut(s) 279, 351
MspR9I CCNGG 2 cut(s) 71, 332
MunI CAATTG 2 cut(s) 90, 110
MvaI CCWGG 2 cut(s) 71, 332
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 158
NlaIII CATG 5 cut(s) 85, 145, 175, 259, 340
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 1 cut(s) 145
PfeI GAWTC 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 69, 330
PspEI GGTNACC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 69, 330
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 2 cut(s) 8, 85
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 158
SaqAI TTAA 2 cut(s) 279, 351
SatI GCNGC 1 cut(s) 251
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 2 cut(s) 8, 85
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 71, 332
SetI ASST 5 cut(s) 31, 58, 63, 128, 269
SinI GGWCC 2 cut(s) 8, 85
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 4 cut(s) 90, 110, 285, 305
SspMI CTAG 2 cut(s) 17, 216
StyD4I CCNGG 2 cut(s) 69, 330
TasI AATT 4 cut(s) 90, 110, 285, 305
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 279, 351
Tru9I TTAA 2 cut(s) 279, 351
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 2 cut(s) 8, 85
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XspI CTAG 2 cut(s) 17, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.