Prupe.1G076500_v2.0.a1

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001262
Physical Location & Seq
Forward (+)
5507713 .. 5514723
7011 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G076500.6

Sequence Viewer

Length: 1089 bp
ATGTCTGTGACCAAGACTCGGACAAGTAGCTTCTCCCGCAACTTTGCATCTGCAAACTCATCTCAAATCCCCGGACTCAAGCATGGCCCTAATGGCACAATGTTTATTTCATCTGGGATACCAGACCTTGATAAGATTTTAGGTGGTGGGTTTTCTCTAGGAAGCCTAGTCATGGTGATGGAGGATGCGGAAGCACCTCATCATATGCTTTTGCTTAGGAATTTTATGTCTCAAGGACTCGTTCACAATCAACCCCTTCTCTATGCAAGCCCATCTAAGGACCCAAGACAATTTCTTGGTACTTTGCCTAGTCCAGCGGTACCCAAAGATGATAAGTCTAGTCATCGAGATCCTGACCAGGAGAAAGGATTGAGGATAGCTTGGCAATATAAGAAGTATTTTGGTGAAAATCAGCACAGTTTTGATAGTCAAGGTGGAAAACATGAGTTCTGCAATGAATTTGACTTGCGGAAGCCCTTGGAGAGGCAATTTCTAAGTGGCAAGCATATAGATTGCATTAGCATTCAAGATTCTCCAAATCTTGTTACCCTTAATGACCGTTGTGCCACATTTTTATCTCAATTTCCAAGAAGTGATGGAAGCATTTCTTCTGTTGGTCGTATTGCCATTCAATCGTTCTGTGCTCCACAGTGTGAATTTTCCAACATGGAATGGGAAATGCTTTCCTTTGTTAGATCTCTAAAAGGCATGGTTAGATCTTCAAATGCAGTTGCTTTTGTGACATTTCCACCTAATCTTCTTTCGCCATCCTCCTGTAAAAGATGGCAGCACATGGCGGACACCTTGCTGTCGGTCAAAGCAATTCCAGACGAGGACAAGGAATTGGAAAAACTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTGAATGTGCAGAAAGTAGCACGTCTTAATACACAGGTTCCTGTGATTCTTGAGGCAACAACCTTGTCAATAAAGTTGAAAAAACGGAGGTTTATGGTTTTAGAATGCCTAAACCAAGCCCCTATTGATGGCTCAAGCGGGAGTTCATATGGCACTACCGGTAGTTGTTCTGTGTCCTCTAAAAGTGGGACGCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

363

Amino Acids

39.97

Weight (kDa)

8.55

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccB7I CCANNNNNTGG 1 cut(s) 874
AciI CCGC 6 cut(s) 37, 188, 317, 469, 797, 1023
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 3 cut(s) 220, 458, 656
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 301, 321
AfiI CCNNNNNNNGG 6 cut(s) 18, 172, 277, 483, 874, 1013
AgeI ACCGGT 1 cut(s) 1043
AgsI TTSAA 4 cut(s) 527, 632, 723, 964
AjiI CACGTC 1 cut(s) 908
AjnI CCWGG 2 cut(s) 357, 867
AluBI AGCT 2 cut(s) 30, 380
AluI AGCT 2 cut(s) 30, 380
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 344
AoxI GGCC 2 cut(s) 85, 880
ApeKI GCWGC 1 cut(s) 787
ApoI RAATTY 3 cut(s) 220, 458, 656
AsiGI ACCGGT 1 cut(s) 1043
Asp700I GAANNNNTTC 1 cut(s) 604
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 86, 280
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 187, 416
AvaII GGWCC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 799
BccI CCATC 6 cut(s) 172, 280, 590, 775, 777, 1007
BciT130I CCWGG 2 cut(s) 359, 869
BciVI GTATCC 1 cut(s) 111
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 4 cut(s) 158, 167, 309, 339
BfuI GTATCC 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 93
BglII AGATCT 2 cut(s) 695, 716
BisI GCNGC 1 cut(s) 788
BlsI GCNGC 1 cut(s) 789
Bme1390I CCNGG 3 cut(s) 72, 359, 869
Bme18I GGWCC 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 908
BmgT120I GGNCC 2 cut(s) 86, 280
BmiI GGNNCC 3 cut(s) 282, 321, 924
BmrFI CCNGG 3 cut(s) 72, 359, 869
BmsI GCATC 2 cut(s) 56, 175
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 4 cut(s) 62, 216, 956, 1003
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 70, 477
BsaWI WCCGGW 1 cut(s) 1043
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 172, 277, 483, 874, 1013
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 2 cut(s) 359, 869
BseDI CCNNGG 2 cut(s) 70, 477
BseGI GGATG 2 cut(s) 190, 767
BseLI CCNNNNNNNGG 6 cut(s) 18, 172, 277, 483, 874, 1013
BseMI GCAATG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 865
BseXI GCAGC 1 cut(s) 799
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 2 cut(s) 87, 882
BshNI GGYRCC 1 cut(s) 319
BshTI ACCGGT 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 2 cut(s) 72, 1044
BslI CCNNNNNNNGG 6 cut(s) 18, 172, 277, 483, 874, 1013
BsmAI GTCTC 1 cut(s) 234
BsmI GAATGC 2 cut(s) 522, 995
BsnI GGCC 2 cut(s) 87, 882
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 3 cut(s) 349, 695, 716
BspACI CCGC 6 cut(s) 37, 188, 317, 469, 797, 1023
BspANI GGCC 2 cut(s) 87, 882
BspLI GGNNCC 3 cut(s) 282, 321, 924
BspPI GGATC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 1 cut(s) 865
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 2 cut(s) 70, 477
BssMI GATC 3 cut(s) 349, 695, 716
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 359, 869
Bst4CI ACNGT 3 cut(s) 419, 560, 651
BstC8I GCNNGC 2 cut(s) 268, 503
BstDEI CTNAG 3 cut(s) 215, 276, 494
BstEII GGTNACC 1 cut(s) 863
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 2 cut(s) 190, 767
BstKTI GATC 3 cut(s) 352, 698, 719
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 349, 695, 716
BstMWI GCNNNNNNNGC 2 cut(s) 36, 93
BstNI CCWGG 2 cut(s) 359, 869
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 3 cut(s) 70, 357, 867
BstV1I GCAGC 1 cut(s) 799
BstX2I RGATCY 3 cut(s) 349, 695, 716
BstYI RGATCY 3 cut(s) 349, 695, 716
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 87, 882
BtrI CACGTC 1 cut(s) 908
BtsCI GGATG 2 cut(s) 190, 767
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 2 cut(s) 268, 503
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 2 cut(s) 86, 280
CseI GACGC 1 cut(s) 1084
Csp6I GTAC 2 cut(s) 300, 320
CspAI ACCGGT 1 cut(s) 1043
CviAII CATG 7 cut(s) 83, 172, 443, 667, 709, 793, 874
CviJI RGCY 9 cut(s) 30, 87, 165, 270, 380, 475, 882, 1004, 1017
CviKI_1 RGCY 9 cut(s) 30, 87, 165, 270, 380, 475, 882, 1004, 1017
CviQI GTAC 2 cut(s) 300, 320
DdeI CTNAG 3 cut(s) 215, 276, 494
DpnI GATC 3 cut(s) 351, 697, 718
DpnII GATC 3 cut(s) 349, 695, 716
DraIII CACNNNGTG 1 cut(s) 653
EciI GGCGGA 1 cut(s) 812
Eco130I CCWWGG 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 280
Eco91I GGTNACC 1 cut(s) 863
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 357, 867
EcoT14I CCWWGG 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 7 cut(s) 86, 175, 446, 670, 712, 796, 877
FalI AAGNNNNNCTT 2 cut(s) 592, 624
FatI CATG 7 cut(s) 82, 171, 442, 666, 708, 792, 873
FauI CCCGC 2 cut(s) 44, 1016
FauNDI CATATG 2 cut(s) 204, 1033
Fnu4HI GCNGC 1 cut(s) 788
FokI GGATG 2 cut(s) 197, 754
Fsp4HI GCNGC 1 cut(s) 788
FspBI CTAG 4 cut(s) 158, 167, 309, 339
GluI GCNGC 1 cut(s) 788
HaeIII GGCC 2 cut(s) 87, 882
HapII CCGG 2 cut(s) 72, 1044
HgaI GACGC 1 cut(s) 1084
Hin1II CATG 7 cut(s) 86, 175, 446, 670, 712, 796, 877
HinfI GANTC 5 cut(s) 16, 75, 237, 530, 931
HpaII CCGG 2 cut(s) 72, 1044
HphI GGTGA 2 cut(s) 187, 416
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 21, 888
Hpy188III TCNNGA 5 cut(s) 347, 353, 527, 827, 935
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 266, 893
HpyCH4III ACNGT 3 cut(s) 419, 560, 651
HpyCH4IV ACGT 1 cut(s) 907
HpyCH4V TGCA 7 cut(s) 47, 53, 266, 453, 516, 728, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 93
HpyF3I CTNAG 3 cut(s) 215, 276, 494
HpySE526I ACGT 1 cut(s) 907
Hsp92II CATG 7 cut(s) 86, 175, 446, 670, 712, 796, 877
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 349, 695, 716
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 2 cut(s) 56, 175
MaeI CTAG 4 cut(s) 158, 167, 309, 339
MaeII ACGT 1 cut(s) 907
MaeIII GTNAC 4 cut(s) 7, 544, 739, 863
MalI GATC 3 cut(s) 351, 697, 718
MboI GATC 3 cut(s) 349, 695, 716
MboII GAAGA 3 cut(s) 600, 711, 749
MflI RGATCY 3 cut(s) 349, 695, 716
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 8 cut(s) 220, 290, 458, 488, 581, 656, 822, 842
MlyI GAGTC 3 cut(s) 10, 69, 231
MmeI TCCRAC 1 cut(s) 687
MnlI CCTC 9 cut(s) 175, 207, 366, 477, 781, 826, 931, 966, 1072
MroXI GAANNNNTTC 1 cut(s) 604
MseI TTAA 2 cut(s) 552, 912
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 72, 1044
MspR9I CCNGG 3 cut(s) 72, 359, 869
Mva1269I GAATGC 2 cut(s) 522, 995
MvaI CCWGG 2 cut(s) 359, 869
MwoI GCNNNNNNNGC 2 cut(s) 36, 93
NciI CCSGG 1 cut(s) 72
NdeI CATATG 2 cut(s) 204, 1033
NdeII GATC 3 cut(s) 349, 695, 716
NlaIII CATG 7 cut(s) 86, 175, 446, 670, 712, 796, 877
NlaIV GGNNCC 3 cut(s) 282, 321, 924
NmuCI GTSAC 2 cut(s) 7, 739
PctI GAATGC 2 cut(s) 522, 995
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 530, 931
PflMI CCANNNNNTGG 1 cut(s) 874
PinAI ACCGGT 1 cut(s) 1043
PkrI GCNGC 1 cut(s) 789
PleI GAGTC 3 cut(s) 10, 69, 231
PpsI GAGTC 3 cut(s) 10, 69, 231
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 357, 867
PspEI GGTNACC 1 cut(s) 863
PspGI CCWGG 2 cut(s) 357, 867
PspN4I GGNNCC 3 cut(s) 282, 321, 924
PspPI GGNCC 2 cut(s) 86, 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 3 cut(s) 349, 695, 716
RsaI GTAC 2 cut(s) 301, 321
RsaNI GTAC 2 cut(s) 300, 320
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 552, 912
SatI GCNGC 1 cut(s) 788
Sau3AI GATC 3 cut(s) 349, 695, 716
Sau96I GGNCC 2 cut(s) 86, 280
SchI GAGTC 3 cut(s) 10, 69, 231
ScrFI CCNGG 3 cut(s) 72, 359, 869
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 2 cut(s) 56, 175
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 4 cut(s) 77, 231, 935, 1018
SmoI CTYRAG 4 cut(s) 77, 231, 935, 1018
Sse9I AATT 8 cut(s) 220, 290, 458, 488, 581, 656, 822, 842
SsiI CCGC 6 cut(s) 37, 188, 317, 469, 797, 1023
SspMI CTAG 4 cut(s) 158, 167, 309, 339
StyD4I CCNGG 3 cut(s) 70, 357, 867
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 3 cut(s) 419, 560, 651
TaiI ACGT 1 cut(s) 910
TaqI TCGA 1 cut(s) 346
TaqII GACCGA 1 cut(s) 802
TasI AATT 8 cut(s) 220, 290, 458, 488, 581, 656, 822, 842
TfiI GAWTC 2 cut(s) 530, 931
Tru1I TTAA 2 cut(s) 552, 912
Tru9I TTAA 2 cut(s) 552, 912
TscAI CASTG 1 cut(s) 656
TseFI GTSAC 2 cut(s) 7, 739
TseI GCWGC 1 cut(s) 787
Tsp45I GTSAC 2 cut(s) 7, 739
TspDTI ATGAA 3 cut(s) 99, 471, 1020
TspGWI ACGGA 1 cut(s) 985
TspRI CASTG 1 cut(s) 656
Van91I CCANNNNNTGG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 280
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 3 cut(s) 220, 458, 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 4 cut(s) 158, 167, 309, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.