Rorug06G0054200

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001262
Physical Location & Seq
Reverse (-)
7500922 .. 7501608
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0054200.1

Sequence Viewer

Length: 687 bp
ATGATTGCTGATGTTATTGATCTCTTGTCTAAGCCAATTCCTAGTATCAATGTTCATCCACAGTTGGATGCTCAGTCGTTTGGAGGCCAGGATGAGCTTGCATTGGCTAAGGAGGGACTCCGGAAGATCTTTGATTGCGGGTTAAAGGCTCTAGCTGATCCCAAAGTGCAAGAAGAGTTTCTCCTTTACTCAGCCACACTGCTATCAGCTGAGTCATGCCCCTCAGAATTGAAGGTTAACGTTTCATCATTCAGGTGCAATCTTTCCGAGGAAACGTCTGCTTTCGTCAAAGCTCAAGATGAGTTGAAGGTGGCCTCAGACTTATCAGCCTCAATCACTCAGAAGAAGTTTGTGGTGCTGCAACAAACTTCAAAGTATGATGAGGTGAAGAAAGAAATTGTCGCCTTAGACGAGAAAGTTGCCGGCTTCAAGGCCATGATCAAAGAGTTGGAAGAACAAATCAAAAGGTTGGAAGCTTGTTTAGCCACAGAAGAGAGCAACAGGGCAAAGATTGATGAGGCTATCGGTTCCATCGAGAAACAAGTCACCACCGCGAGAGATGGATTGGTCTCGGACTTGGCACAAGTGTCTTCCATGGAAGGATCGACCCAAGCAGCTAACGAATTAGTAGCTGGTAAACAGTCGGACTGGGATAACCTAAAGCTTAGTTTTACTAAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

228

Amino Acids

24.89

Weight (kDa)

4.8

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 2 cut(s) 138, 552
AclI AACGTT 1 cut(s) 240
AclWI GGATC 2 cut(s) 152, 610
AgsI TTSAA 4 cut(s) 232, 307, 372, 430
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 8 cut(s) 97, 155, 209, 293, 476, 617, 632, 664
AluI AGCT 8 cut(s) 97, 155, 209, 293, 476, 617, 632, 664
Alw26I GTCTC 1 cut(s) 574
AlwI GGATC 2 cut(s) 152, 610
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 3 cut(s) 85, 312, 432
ApeKI GCWGC 2 cut(s) 358, 614
Asp700I GAANNNNTTC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 397, 538
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 345, 626
BccI CCATC 2 cut(s) 539, 554
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 574
BfaI CTAG 2 cut(s) 42, 152
BglII AGATCT 1 cut(s) 126
BisI GCNGC 2 cut(s) 359, 615
BlsI GCNGC 2 cut(s) 360, 616
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 267, 594
BsaWI WCCGGW 1 cut(s) 120
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 653
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 267, 594
BseGI GGATG 3 cut(s) 55, 73, 97
BseMII CTCAG 6 cut(s) 86, 201, 204, 237, 330, 353
BseNI ACTGG 1 cut(s) 653
BseXI GCAGC 2 cut(s) 345, 626
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 3 cut(s) 87, 314, 434
BsiSI CCGG 2 cut(s) 121, 423
BslFI GGGAC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 574
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 3 cut(s) 87, 314, 434
Bso31I GGTCTC 1 cut(s) 574
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 19, 126, 157, 438, 602
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 2 cut(s) 138, 552
BspANI GGCC 3 cut(s) 87, 314, 434
BspCNI CTCAG 6 cut(s) 85, 202, 203, 236, 329, 352
BspEI TCCGGA 1 cut(s) 120
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 2 cut(s) 152, 610
BspTNI GGTCTC 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 267, 594
BssMI GATC 5 cut(s) 19, 126, 157, 438, 602
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 63, 642
Bst6I CTCTTC 2 cut(s) 168, 486
BstC8I GCNNGC 2 cut(s) 99, 424
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 55, 73, 97
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 5 cut(s) 22, 129, 160, 441, 605
BstMAI GTCTC 1 cut(s) 574
BstMBI GATC 5 cut(s) 19, 126, 157, 438, 602
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 2 cut(s) 345, 626
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 3 cut(s) 87, 314, 434
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 3 cut(s) 55, 73, 97
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 99, 424
Cfr10I RCCGGY 1 cut(s) 422
CviAII CATG 4 cut(s) 216, 436, 595, 684
DpnI GATC 5 cut(s) 21, 128, 159, 440, 604
DpnII GATC 5 cut(s) 19, 126, 157, 438, 602
Eam1104I CTCTTC 2 cut(s) 168, 486
EarI CTCTTC 2 cut(s) 168, 486
Eco130I CCWWGG 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 219, 439, 598, 687
FaiI YATR 5 cut(s) 217, 378, 437, 596, 685
FaqI GGGAC 1 cut(s) 129
FatI CATG 4 cut(s) 215, 435, 594, 683
FauI CCCGC 1 cut(s) 131
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 359, 615
FokI GGATG 3 cut(s) 42, 80, 104
Fsp4HI GCNGC 2 cut(s) 359, 615
FspBI CTAG 2 cut(s) 42, 152
GluI GCNGC 2 cut(s) 359, 615
HaeIII GGCC 3 cut(s) 87, 314, 434
HapII CCGG 2 cut(s) 121, 423
Hin1II CATG 4 cut(s) 219, 439, 598, 687
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 474, 662
HinfI GANTC 2 cut(s) 117, 212
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 2 cut(s) 121, 423
HphI GGTGA 2 cut(s) 397, 538
Hpy166II GTNNAC 2 cut(s) 238, 638
Hpy188I TCNGA 6 cut(s) 226, 268, 319, 342, 574, 646
Hpy188III TCNNGA 3 cut(s) 121, 296, 535
Hpy8I GTNNAC 2 cut(s) 238, 638
HpyAV CCTTC 3 cut(s) 226, 301, 593
HpyCH4III ACNGT 2 cut(s) 63, 642
HpyCH4IV ACGT 2 cut(s) 240, 275
HpyCH4V TGCA 5 cut(s) 101, 169, 258, 361, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpySE526I ACGT 2 cut(s) 240, 275
Hsp92II CATG 4 cut(s) 219, 439, 598, 687
Kpn2I TCCGGA 1 cut(s) 120
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 438
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 5 cut(s) 19, 126, 157, 438, 602
LpnPI CCDG 8 cut(s) 74, 101, 134, 238, 436, 487, 618, 634
Lsp1109I GCAGC 2 cut(s) 345, 626
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 42, 152
MaeII ACGT 2 cut(s) 240, 275
MaeIII GTNAC 1 cut(s) 544
MalI GATC 5 cut(s) 21, 128, 159, 440, 604
MboI GATC 5 cut(s) 19, 126, 157, 438, 602
MboII GAAGA 7 cut(s) 136, 185, 355, 400, 464, 503, 582
MflI RGATCY 1 cut(s) 126
MluCI AATT 4 cut(s) 36, 227, 396, 623
MlyI GAGTC 2 cut(s) 111, 221
MmeI TCCRAC 4 cut(s) 45, 429, 450, 624
MnlI CCTC 8 cut(s) 77, 106, 232, 262, 325, 340, 376, 511
MroI TCCGGA 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 2 cut(s) 143, 237
MslI CAYNNNNRTG 1 cut(s) 253
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 2 cut(s) 121, 423
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 482
NaeI GCCGGC 1 cut(s) 424
NcoI CCATGG 1 cut(s) 594
NdeII GATC 5 cut(s) 19, 126, 157, 438, 602
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 4 cut(s) 219, 439, 598, 687
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 408, 531
PdiI GCCGGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 360, 616
PleI GAGTC 2 cut(s) 111, 220
PpsI GAGTC 2 cut(s) 111, 220
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 529
PsuI RGATCY 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 2 cut(s) 143, 237
SatI GCNGC 2 cut(s) 359, 615
Sau3AI GATC 5 cut(s) 19, 126, 157, 438, 602
SchI GAGTC 2 cut(s) 111, 221
ScrFI CCNGG 1 cut(s) 89
SfaNI GCATC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 4 cut(s) 36, 227, 396, 623
SsiI CCGC 2 cut(s) 138, 552
SspMI CTAG 2 cut(s) 42, 152
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 2 cut(s) 63, 642
TaiI ACGT 2 cut(s) 243, 278
TaqI TCGA 2 cut(s) 534, 605
TasI AATT 4 cut(s) 36, 227, 396, 623
Tru1I TTAA 2 cut(s) 143, 237
Tru9I TTAA 2 cut(s) 143, 237
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 2 cut(s) 358, 614
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 2 cut(s) 44, 234
TspRI CASTG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 42, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.