MD01G1042700.v1.1

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001262
Physical Location & Seq
Forward (+)
14100073 .. 14101561
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1042700.v1.1.491

Sequence Viewer

Length: 426 bp
ATGCCATCTGTAAGGCTTTTCGGATGGTCATGGTTACGTGATGGCAGCATTTCTTCTGTTGGTCGTATTGCAATTCAATCATTCTGTGCTCCACAGTGTGAATATACCGACATGGAATGGGACATGCTTTCCTTTCTTAGATCTCTAAGAGCCATGGTCAGATCTTCAAATGCAGTTGCTGTTGTGACATTTCCACCTAGTCTTCTTTTGCCATCCTTCTCTATAAGATGGCAGCACATGGCAGACACCTTGCTATCGGTTCCTGTGATCCTTGAGGCAACAACGTACTCAATGAAGTTGAAAAGGCGGAGGTTTATGGTTTTAGAATGTCTAAACCAAGCCCCAATCGATGATTCAAGTGGGAGTTCGTATGGCACTTCGGGTAGTTGTTCTGTCTCCTCCAAAACTGGGGCTCTTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

142

Amino Acids

15.64

Weight (kDa)

8.45

Isoelectric Point (pI)

66.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 18 - 87 3.8e-16 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AclWI GGATC 1 cut(s) 262
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 408
AgsI TTSAA 4 cut(s) 77, 168, 301, 357
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 45, 232
BanII GRGCYC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 57, 244
BccI CCATC 5 cut(s) 13, 18, 35, 220, 222
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 198
BglII AGATCT 2 cut(s) 140, 161
BisI GCNGC 2 cut(s) 46, 233
BlsI GCNGC 2 cut(s) 47, 234
BmiI GGNNCC 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 412
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 29, 212
BseLI CCNNNNNNNGG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 2 cut(s) 57, 244
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 91
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 91, 415
Bsp143I GATC 3 cut(s) 140, 161, 267
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 140, 161, 267
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 137, 146
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 29, 212
BstKTI GATC 3 cut(s) 143, 164, 270
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 3 cut(s) 140, 161, 267
BstNSI RCATGY 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 57, 244
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 2 cut(s) 140, 161
BstYI RGATCY 2 cut(s) 140, 161
Bsu15I ATCGAT 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 29, 212
BtsIMutI CAGTG 1 cut(s) 101
CaiI CAGNNNCTG 1 cut(s) 179
ClaI ATCGAT 1 cut(s) 348
Csp6I GTAC 1 cut(s) 286
CviAII CATG 5 cut(s) 30, 112, 124, 154, 238
CviJI RGCY 4 cut(s) 16, 152, 341, 413
CviKI_1 RGCY 4 cut(s) 16, 152, 341, 413
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 137, 146
DpnI GATC 3 cut(s) 142, 163, 269
DpnII GATC 3 cut(s) 140, 161, 267
DraIII CACNNNGTG 1 cut(s) 98
EciI GGCGGA 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 5 cut(s) 33, 115, 127, 157, 241
FaiI YATR 9 cut(s) 31, 105, 113, 125, 155, 224, 239, 317, 372
FaqI GGGAC 1 cut(s) 134
FatI CATG 5 cut(s) 29, 111, 123, 153, 237
Fnu4HI GCNGC 2 cut(s) 46, 233
FokI GGATG 2 cut(s) 36, 199
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 2 cut(s) 46, 233
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 46, 233
Hin1II CATG 5 cut(s) 33, 115, 127, 157, 241
HinfI GANTC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 23, 161
Hpy188III TCNNGA 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 37, 284
HpyCH4V TGCA 2 cut(s) 71, 173
HpyF3I CTNAG 2 cut(s) 137, 146
HpySE526I ACGT 2 cut(s) 37, 284
Hsp92II CATG 5 cut(s) 33, 115, 127, 157, 241
Kzo9I GATC 3 cut(s) 140, 161, 267
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 276, 393
Lsp1109I GCAGC 2 cut(s) 57, 244
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 37, 284
MaeIII GTNAC 2 cut(s) 33, 184
MalI GATC 3 cut(s) 142, 163, 269
MboI GATC 3 cut(s) 140, 161, 267
MboII GAAGA 3 cut(s) 45, 156, 194
MflI RGATCY 2 cut(s) 140, 161
MhlI GDGCHC 2 cut(s) 91, 415
MluCI AATT 1 cut(s) 72
MnlI CCTC 3 cut(s) 268, 303, 409
MseI TTAA 1 cut(s) 424
NcoI CCATGG 1 cut(s) 153
NdeII GATC 3 cut(s) 140, 161, 267
NlaIII CATG 5 cut(s) 33, 115, 127, 157, 241
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 1 cut(s) 127
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 47, 234
Ppu21I YACGTR 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 2 cut(s) 140, 161
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 424
SatI GCNGC 2 cut(s) 46, 233
Sau3AI GATC 3 cut(s) 140, 161, 267
SduI GDGCHC 2 cut(s) 91, 415
SetI ASST 5 cut(s) 40, 199, 251, 287, 314
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 307
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 40, 287
TaqI TCGA 1 cut(s) 348
TasI AATT 1 cut(s) 72
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 45, 232
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 308
TspRI CASTG 1 cut(s) 101
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.