FvH4_1g19290

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001262
Physical Location & Seq
Reverse (-)
11510491 .. 11513679
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19290.t5

Sequence Viewer

Length: 1089 bp
ATGGCTGCAACCAAGACTCGGACGAGTAGCTTCTCTCGCAATTTTTCTGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATGGCACAATGTTTGTTTCATCCGGGATTCCAGACCTTGACAAAATTTTAGGGGGTGGTTTTGCTCTAGGAAGCCTAGTCATGGTGATGGAAGATGCAGAAGCACCTCATCATATGCTTTTGCTTAGGAATTTCATGTCTCAAGGACTTGTTCACAACCAACATCTTCTCTATGCAAGCCCAGCCAAGGATCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGCCGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATATAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAATGGGAAACATGAGTTCTGCAACAACTTTGACTTGCGGAAGCCCTTGGAGAGGCAGTTTCTAACGGGCAAGCTAATAGAATGTGCTAGCATACTTGATTCTCCGAATCTTGTCACATTTCATGACCGTTGTGCTACTTTTTTATCACAATTTCCAAGAAATGACAGCAACATTTCTTGTGTTGGTCGAATTGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAACCTGGAATGGGACATGCTTTCCTTACTTAGATCTCTGAAAAGCATGCTACGATCTTCAAATGCAGTTGCTGTTGTGACATTTCTGCCTAGTCTTCTTTCATCATCCTCCTCTACAAGATGGCAGCACATTGCGGATACCTTGCTGTCAGTTAAAGCGCTTCCAGATGAGGACAAGGAATTGGCAACCCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTTGCACAAATTAACACGCAGGTTCCTGTGATTCTTGATGCAACAACCTTCTCAATAAAGCTGCAAAAGCGGAGGTTTTTGGTTTTAGAATGTCTAAATCAGGCCCCTGTCGATGGTTCTAGTGGGAGTTCATATGGCACTTCTGGTAGTTGTTCTGGGTCCTCTAAGACTGGATCTCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

363

Amino Acids

39.63

Weight (kDa)

8.37

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 21 - 349 1.6e-85 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 910
AccB7I CCANNNNNTGG 2 cut(s) 653, 874
AciI CCGC 3 cut(s) 469, 797, 970
AclWI GGATC 3 cut(s) 275, 288, 1081
AcsI RAATTY 2 cut(s) 135, 220
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 301, 321
AfeI AGCGCT 1 cut(s) 822
AfiI CCNNNNNNNGG 9 cut(s) 18, 172, 277, 358, 483, 653, 673, 874, 1013
AgsI TTSAA 2 cut(s) 632, 723
AjnI CCWGG 3 cut(s) 70, 666, 867
AluBI AGCT 5 cut(s) 30, 57, 380, 505, 961
AluI AGCT 5 cut(s) 30, 57, 380, 505, 961
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 2 cut(s) 234, 342
AlwI GGATC 3 cut(s) 275, 288, 1081
AlwNI CAGNNNCTG 1 cut(s) 734
Aor51HI AGCGCT 1 cut(s) 822
AoxI GGCC 2 cut(s) 880, 1002
ApeKI GCWGC 3 cut(s) 5, 787, 961
ApoI RAATTY 2 cut(s) 135, 220
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 3 cut(s) 86, 1003, 1059
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 51, 187, 416
AsuNHI GCTAGC 1 cut(s) 518
AvaII GGWCC 2 cut(s) 86, 1059
BamHI GGATCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 799, 948
BccI CCATC 3 cut(s) 172, 777, 1007
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 3 cut(s) 72, 668, 869
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 234, 342
BfaI CTAG 7 cut(s) 158, 167, 309, 339, 519, 753, 1020
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 910
BfuI GTATCC 1 cut(s) 793
BglII AGATCT 1 cut(s) 695
BisI GCNGC 3 cut(s) 6, 788, 962
BlsI GCNGC 3 cut(s) 7, 789, 963
Bme1390I CCNGG 4 cut(s) 72, 115, 668, 869
Bme18I GGWCC 2 cut(s) 86, 1059
BmgT120I GGNCC 3 cut(s) 86, 1003, 1059
BmiI GGNNCC 5 cut(s) 88, 282, 924, 1005, 1060
BmrFI CCNGG 4 cut(s) 72, 115, 668, 869
BmsI GCATC 2 cut(s) 175, 928
BmtI GCTAGC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 749
Bpu10I CCTNAGC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 62, 216
BpuMI CCSGG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 70, 276, 477
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 473, 503
Bsc4I CCNNNNNNNGG 9 cut(s) 18, 172, 277, 358, 483, 653, 673, 874, 1013
Bse1I ACTGG 2 cut(s) 865, 1075
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 3 cut(s) 72, 668, 869
BseDI CCNNGG 3 cut(s) 70, 276, 477
BseGI GGATG 2 cut(s) 110, 767
BseLI CCNNNNNNNGG 9 cut(s) 18, 172, 277, 358, 483, 653, 673, 874, 1013
BseMI GCAATG 1 cut(s) 792
BseNI ACTGG 2 cut(s) 865, 1075
BseRI GAGGAG 1 cut(s) 763
BseXI GCAGC 2 cut(s) 799, 948
BseYI CCCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 2 cut(s) 882, 1004
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 9 cut(s) 18, 172, 277, 358, 483, 653, 673, 874, 1013
BsmAI GTCTC 2 cut(s) 234, 342
BsmFI GGGAC 1 cut(s) 689
BsnI GGCC 2 cut(s) 882, 1004
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 5 cut(s) 280, 355, 695, 716, 1073
BspACI CCGC 3 cut(s) 469, 797, 970
BspANI GGCC 2 cut(s) 882, 1004
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 5 cut(s) 88, 282, 924, 1005, 1060
BspMI ACCTGC 1 cut(s) 910
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 3 cut(s) 275, 288, 1081
BspTNI GGTCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 2 cut(s) 865, 1075
BssECI CCNNGG 3 cut(s) 70, 276, 477
BssMI GATC 5 cut(s) 280, 355, 695, 716, 1073
BssT1I CCWWGG 2 cut(s) 276, 477
Bst2UI CCWGG 3 cut(s) 72, 668, 869
Bst4CI ACNGT 3 cut(s) 291, 560, 651
BstC8I GCNNGC 5 cut(s) 55, 268, 503, 520, 710
BstDEI CTNAG 3 cut(s) 215, 692, 1065
BstEII GGTNACC 1 cut(s) 863
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 2 cut(s) 110, 767
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 5 cut(s) 283, 358, 698, 719, 1076
BstMAI GTCTC 2 cut(s) 234, 342
BstMBI GATC 5 cut(s) 280, 355, 695, 716, 1073
BstMWI GCNNNNNNNGC 3 cut(s) 36, 272, 967
BstNI CCWGG 3 cut(s) 72, 668, 869
BstNSI RCATGY 2 cut(s) 682, 712
BstPI GGTNACC 1 cut(s) 863
BstSCI CCNGG 4 cut(s) 70, 113, 666, 867
BstV1I GCAGC 2 cut(s) 799, 948
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 3 cut(s) 280, 695, 1073
BstYI RGATCY 3 cut(s) 280, 695, 1073
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 882, 1004
BtsCI GGATG 2 cut(s) 110, 767
BtsIMutI CAGTG 1 cut(s) 656
BveI ACCTGC 1 cut(s) 910
Cac8I GCNNGC 5 cut(s) 55, 268, 503, 520, 710
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 1 cut(s) 553
CfoI GCGC 1 cut(s) 823
Cfr13I GGNCC 3 cut(s) 86, 1003, 1059
Csp6I GTAC 2 cut(s) 300, 320
CviAII CATG 8 cut(s) 83, 172, 226, 443, 554, 679, 709, 874
CviQI GTAC 2 cut(s) 300, 320
DdeI CTNAG 3 cut(s) 215, 692, 1065
DpnI GATC 5 cut(s) 282, 357, 697, 718, 1075
DpnII GATC 5 cut(s) 280, 355, 695, 716, 1073
DraIII CACNNNGTG 1 cut(s) 653
Eco130I CCWWGG 2 cut(s) 276, 477
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 86, 1059
Eco47III AGCGCT 1 cut(s) 822
Eco91I GGTNACC 1 cut(s) 863
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 2 cut(s) 1003, 1059
EcoO65I GGTNACC 1 cut(s) 863
EcoRII CCWGG 3 cut(s) 70, 666, 867
EcoT14I CCWWGG 2 cut(s) 276, 477
ErhI CCWWGG 2 cut(s) 276, 477
FaeI CATG 8 cut(s) 86, 175, 229, 446, 557, 682, 712, 877
FaqI GGGAC 1 cut(s) 689
FatI CATG 8 cut(s) 82, 171, 225, 442, 553, 678, 708, 873
FauNDI CATATG 2 cut(s) 204, 1033
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 6, 788, 962
FokI GGATG 2 cut(s) 97, 754
Fsp4HI GCNGC 3 cut(s) 6, 788, 962
FspBI CTAG 7 cut(s) 158, 167, 309, 339, 519, 753, 1020
GlaI GCGC 1 cut(s) 822
GluI GCNGC 3 cut(s) 6, 788, 962
GsaI CCCAGC 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 2 cut(s) 882, 1004
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 823
Hin1II CATG 8 cut(s) 86, 175, 229, 446, 557, 682, 712, 877
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HinfI GANTC 6 cut(s) 16, 75, 118, 530, 538, 931
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 51, 187, 416
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 21, 537, 702
Hpy188III TCNNGA 7 cut(s) 122, 347, 359, 554, 827, 935, 1079
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 893, 958
HpyCH4III ACNGT 3 cut(s) 291, 560, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 272, 967
HpyF3I CTNAG 3 cut(s) 215, 692, 1065
Hsp92II CATG 8 cut(s) 86, 175, 229, 446, 557, 682, 712, 877
HspAI GCGC 1 cut(s) 821
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 280, 355, 695, 716, 1073
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 2 cut(s) 799, 948
LweI GCATC 2 cut(s) 175, 928
MaeI CTAG 7 cut(s) 158, 167, 309, 339, 519, 753, 1020
MaeIII GTNAC 3 cut(s) 544, 739, 863
MalI GATC 5 cut(s) 282, 357, 697, 718, 1075
MboI GATC 5 cut(s) 280, 355, 695, 716, 1073
MboII GAAGA 4 cut(s) 194, 248, 711, 749
MflI RGATCY 3 cut(s) 280, 695, 1073
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 7 cut(s) 40, 135, 220, 581, 621, 842, 909
MlyI GAGTC 2 cut(s) 10, 69
MmeI TCCRAC 1 cut(s) 687
MseI TTAA 3 cut(s) 816, 888, 912
MslI CAYNNNNRTG 1 cut(s) 176
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 4 cut(s) 72, 115, 668, 869
MvaI CCWGG 3 cut(s) 72, 668, 869
MwoI GCNNNNNNNGC 3 cut(s) 36, 272, 967
NciI CCSGG 1 cut(s) 115
NdeI CATATG 2 cut(s) 204, 1033
NdeII GATC 5 cut(s) 280, 355, 695, 716, 1073
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 8 cut(s) 86, 175, 229, 446, 557, 682, 712, 877
NlaIV GGNNCC 5 cut(s) 88, 282, 924, 1005, 1060
NmuCI GTSAC 2 cut(s) 544, 739
NspI RCATGY 2 cut(s) 682, 712
PaeI GCATGC 1 cut(s) 712
PagI TCATGA 1 cut(s) 553
PfeI GAWTC 4 cut(s) 118, 530, 538, 931
PflMI CCANNNNNTGG 2 cut(s) 653, 874
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 3 cut(s) 7, 789, 963
PleI GAGTC 2 cut(s) 10, 69
PpsI GAGTC 2 cut(s) 10, 69
PpuMI RGGWCCY 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 1059
Psp6I CCWGG 3 cut(s) 70, 666, 867
PspEI GGTNACC 1 cut(s) 863
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 3 cut(s) 70, 666, 867
PspN4I GGNNCC 5 cut(s) 88, 282, 924, 1005, 1060
PspPI GGNCC 3 cut(s) 86, 1003, 1059
PspPPI RGGWCCY 1 cut(s) 1059
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 3 cut(s) 280, 695, 1073
RsaI GTAC 2 cut(s) 301, 321
RsaNI GTAC 2 cut(s) 300, 320
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 3 cut(s) 816, 888, 912
SatI GCNGC 3 cut(s) 6, 788, 962
Sau3AI GATC 5 cut(s) 280, 355, 695, 716, 1073
Sau96I GGNCC 3 cut(s) 86, 1003, 1059
SchI GAGTC 2 cut(s) 10, 69
ScrFI CCNGG 4 cut(s) 72, 115, 668, 869
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 2 cut(s) 175, 928
SinI GGWCC 2 cut(s) 86, 1059
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 77, 231
SmoI CTYRAG 2 cut(s) 77, 231
SphI GCATGC 1 cut(s) 712
Sse9I AATT 7 cut(s) 40, 135, 220, 581, 621, 842, 909
SsiI CCGC 3 cut(s) 469, 797, 970
SspMI CTAG 7 cut(s) 158, 167, 309, 339, 519, 753, 1020
StyD4I CCNGG 4 cut(s) 70, 113, 666, 867
StyI CCWWGG 2 cut(s) 276, 477
TaaI ACNGT 3 cut(s) 291, 560, 651
TaqI TCGA 3 cut(s) 346, 619, 1011
TasI AATT 7 cut(s) 40, 135, 220, 581, 621, 842, 909
TfiI GAWTC 4 cut(s) 118, 530, 538, 931
Tru1I TTAA 3 cut(s) 816, 888, 912
Tru9I TTAA 3 cut(s) 816, 888, 912
TscAI CASTG 1 cut(s) 656
TseFI GTSAC 2 cut(s) 544, 739
TseI GCWGC 3 cut(s) 5, 787, 961
Tsp45I GTSAC 2 cut(s) 544, 739
TspDTI ATGAA 6 cut(s) 99, 214, 345, 542, 753, 1020
TspRI CASTG 1 cut(s) 656
Van91I CCANNNNNTGG 2 cut(s) 653, 874
VpaK11BI GGWCC 2 cut(s) 86, 1059
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 2 cut(s) 135, 220
XceI RCATGY 2 cut(s) 682, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XspI CTAG 7 cut(s) 158, 167, 309, 339, 519, 753, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.