Rroxscaffold_2G00133130

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001262
Physical Location & Seq
Forward (+)
70263772 .. 70264961
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133130.1

Sequence Viewer

Length: 507 bp
ATGGGTGCTAGTTTGTCACAAAAAGGTCAAATGGACTGGGGCCTGAATGACATGGGCTCGGTTGCAAAATCTCAACAATGGTCCACTGAATGGGACATGCTCTCCTTCCTTATATCTCTAAAAAGCATGCTACGATCTTCAAATGCAGTTGCTGTTGTGACATTTCCGCCTAGTCTTCTTTCATCATCCTCCTCTACAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCAGATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGCGCAAATTAACACACAGGTTCCTGTCATTCTTGAGGCAACAACCTTCTCAATAAAGCTGCAAAAGCGGAGGTTTTTGGTTTTAGAGTGTCTAAACCAAGCCCCTATCGATGGTTCTAGTGGGAGTTCATATGGCACTTCTGGTAGTTGTTCTGGGTCCTCTAAAACTGGATATCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

168

Amino Acids

18.18

Weight (kDa)

5.75

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 20 - 168 4.2e-34 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 90, 292
AciI CCGC 2 cut(s) 167, 388
AfiI CCNNNNNNNGG 3 cut(s) 90, 292, 431
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 2 cut(s) 40, 298
ApeKI GCWGC 2 cut(s) 205, 379
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 3 cut(s) 40, 81, 477
AvaII GGWCC 2 cut(s) 81, 477
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 217, 366
BccI CCATC 2 cut(s) 195, 425
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 3 cut(s) 9, 171, 438
BisI GCNGC 2 cut(s) 206, 380
BlsI GCNGC 2 cut(s) 207, 381
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 2 cut(s) 81, 477
BmgT120I GGNCC 3 cut(s) 40, 81, 477
BmiI GGNNCC 3 cut(s) 41, 342, 478
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 292, 431
Bse1I ACTGG 3 cut(s) 41, 283, 493
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 429
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 90, 292, 431
BseNI ACTGG 3 cut(s) 41, 283, 493
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 217, 366
BsgI GTGCAG 1 cut(s) 332
BshFI GGCC 2 cut(s) 42, 300
BshVI ATCGAT 1 cut(s) 429
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 3 cut(s) 90, 292, 431
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 42, 300
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 2 cut(s) 167, 388
BspANI GGCC 2 cut(s) 42, 300
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 41, 342, 478
BsrI ACTGG 3 cut(s) 41, 283, 493
BssMI GATC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 128
BstEII GGTNACC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 2 cut(s) 100, 130
BstPI GGTNACC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 217, 366
BstV2I GAAGAC 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 2 cut(s) 42, 300
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 40, 81, 477
ClaI ATCGAT 1 cut(s) 429
CviAII CATG 5 cut(s) 52, 97, 127, 211, 292
CviJI RGCY 5 cut(s) 42, 57, 300, 379, 422
CviKI_1 RGCY 5 cut(s) 42, 57, 300, 379, 422
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 494
Eco47I GGWCC 2 cut(s) 81, 477
Eco91I GGTNACC 1 cut(s) 281
EcoO109I RGGNCCY 2 cut(s) 40, 477
EcoO65I GGTNACC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 494
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 5 cut(s) 55, 100, 130, 214, 295
FaiI YATR 8 cut(s) 53, 98, 113, 128, 212, 293, 451, 453
FaqI GGGAC 1 cut(s) 107
FatI CATG 5 cut(s) 51, 96, 126, 210, 291
FauNDI CATATG 1 cut(s) 451
Fnu4HI GCNGC 2 cut(s) 206, 380
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 206, 380
FspBI CTAG 3 cut(s) 9, 171, 438
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 206, 380
HaeIII GGCC 2 cut(s) 42, 300
HhaI GCGC 1 cut(s) 325
Hin1II CATG 5 cut(s) 55, 100, 130, 214, 295
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 245, 353, 497
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 3 cut(s) 115, 311, 376
HpyCH4V TGCA 4 cut(s) 65, 146, 313, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
Hsp92II CATG 5 cut(s) 55, 100, 130, 214, 295
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 2 cut(s) 217, 366
MaeI CTAG 3 cut(s) 9, 171, 438
MaeIII GTNAC 3 cut(s) 15, 157, 281
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 2 cut(s) 129, 167
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 3 cut(s) 240, 260, 327
MnlI CCTC 6 cut(s) 199, 202, 244, 349, 384, 490
MseI TTAA 3 cut(s) 234, 306, 330
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeI CATATG 1 cut(s) 451
NdeII GATC 1 cut(s) 134
NlaIII CATG 5 cut(s) 55, 100, 130, 214, 295
NlaIV GGNNCC 3 cut(s) 41, 342, 478
NmuCI GTSAC 2 cut(s) 15, 157
NspI RCATGY 2 cut(s) 100, 130
PaeI GCATGC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 90, 292
PkrI GCNGC 2 cut(s) 207, 381
PpuMI RGGWCCY 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 41, 342, 478
PspPI GGNCC 3 cut(s) 40, 81, 477
PspPPI RGGWCCY 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 152
SaqAI TTAA 3 cut(s) 234, 306, 330
SatI GCNGC 2 cut(s) 206, 380
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 3 cut(s) 40, 81, 477
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 59
SetI ASST 6 cut(s) 28, 224, 342, 368, 381, 395
SinI GGWCC 2 cut(s) 81, 477
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 130
Sse9I AATT 3 cut(s) 240, 260, 327
SsiI CCGC 2 cut(s) 167, 388
SspMI CTAG 3 cut(s) 9, 171, 438
StyD4I CCNGG 1 cut(s) 285
TaqI TCGA 1 cut(s) 429
TasI AATT 3 cut(s) 240, 260, 327
Tru1I TTAA 3 cut(s) 234, 306, 330
Tru9I TTAA 3 cut(s) 234, 306, 330
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 15, 157
TseI GCWGC 2 cut(s) 205, 379
Tsp45I GTSAC 2 cut(s) 15, 157
TspDTI ATGAA 2 cut(s) 171, 438
TspRI CASTG 1 cut(s) 91
Van91I CCANNNNNTGG 2 cut(s) 90, 292
VpaK11BI GGWCC 2 cut(s) 81, 477
XceI RCATGY 2 cut(s) 100, 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XspI CTAG 3 cut(s) 9, 171, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.