RLG00000013800

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001262
Physical Location & Seq
Reverse (-)
41225889 .. 41228364
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013800

Sequence Viewer

Length: 1029 bp
ATGGCTGCGACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTCGGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATGGCACAATGTTTGTTTCATCTGGGATTCCAGACCTTGACAAAATTTTAGGTGGTGGTTTTGCTCTAGGAAGCCTAGTAATGGTGATGGAAGATGCAGAAGCACCTCATCATATGCATTTACTTGGGAATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGTGGAGAAAGGGTTGAGGATAGCTTGGCAATACAACAAGTATTTTGGTGAAAATCAGCAGGGTTTTAATAGTCAAAATGGGAAACAAGAGTTCAGCAACAACTTCGACTTGCGGAAGCCCTTGGAGAGGCAGTTTCTTACAGGCAAGCGAATAGATTGTGCTAGCATTCTTGATTCTCCAACTCTTGTCACACTTTATGATCGTTGTGCTACATTTTTATCACAATTTCCAAGAAGTGACAGCAACATTCCTTGTGTTGGTCGTATTGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAAATCTCTAAAAAGCATGCTACGATCTTCAAATGCAGTTGCTGTTGTGACATTTCCGCCTAGTCTTCTTTCATCATCCTCCTCTACAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGACAAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAATAGTGCAAATTAACACACAGGAAGTTCCTGTCATTCTTGAGGCAACAACTTTCTCAATAAAGCTGCAAAAGCGGAGGTTTTTGGTTTTAGAATGTCTAAACCAGGCCCCTATCGATGGTTCTAGTGGGAGTTCATATGGCACTTCTGGTAGTTGTTCTGGGTCCTCTAAAACTGGATATCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

343

Amino Acids

37.35

Weight (kDa)

8.62

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 21 - 342 7.2e-79 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 611, 811
AciI CCGC 3 cut(s) 427, 707, 910
AcsI RAATTY 2 cut(s) 135, 220
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 9 cut(s) 18, 172, 277, 441, 572, 611, 631, 811, 953
AgsI TTSAA 2 cut(s) 590, 681
AjnI CCWGG 4 cut(s) 70, 624, 804, 939
AluBI AGCT 4 cut(s) 30, 57, 338, 901
AluI AGCT 4 cut(s) 30, 57, 338, 901
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 2 cut(s) 817, 942
ApeKI GCWGC 3 cut(s) 5, 745, 901
ApoI RAATTY 2 cut(s) 135, 220
AspS9I GGNCC 4 cut(s) 86, 280, 943, 999
AsuHPI GGTGA 3 cut(s) 51, 187, 374
AsuNHI GCTAGC 1 cut(s) 476
AvaII GGWCC 3 cut(s) 86, 280, 999
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 757, 888
BccI CCATC 3 cut(s) 172, 735, 947
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 4 cut(s) 72, 626, 806, 941
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 7 cut(s) 18, 158, 167, 309, 477, 711, 960
BisI GCNGC 3 cut(s) 6, 746, 902
BlsI GCNGC 3 cut(s) 7, 747, 903
Bme1390I CCNGG 4 cut(s) 72, 626, 806, 941
Bme18I GGWCC 3 cut(s) 86, 280, 999
BmgT120I GGNCC 4 cut(s) 86, 280, 943, 999
BmiI GGNNCC 4 cut(s) 88, 282, 945, 1000
BmrFI CCNGG 4 cut(s) 72, 626, 806, 941
BmsI GCATC 1 cut(s) 175
BmtI GCTAGC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 707
BpuEI CTTGAG 3 cut(s) 62, 216, 896
Bsa29I ATCGAT 1 cut(s) 951
BsaJI CCNNGG 3 cut(s) 70, 276, 435
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 431, 461
Bsc4I CCNNNNNNNGG 9 cut(s) 18, 172, 277, 441, 572, 611, 631, 811, 953
Bse1I ACTGG 3 cut(s) 314, 802, 1015
BseBI CCWGG 4 cut(s) 72, 626, 806, 941
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 3 cut(s) 70, 276, 435
BseGI GGATG 1 cut(s) 725
BseLI CCNNNNNNNGG 9 cut(s) 18, 172, 277, 441, 572, 611, 631, 811, 953
BseNI ACTGG 3 cut(s) 314, 802, 1015
BseRI GAGGAG 1 cut(s) 721
BseXI GCAGC 2 cut(s) 757, 888
BseYI CCCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 851
BshFI GGCC 2 cut(s) 819, 944
BshVI ATCGAT 1 cut(s) 951
BsiHKAI GWGCWC 1 cut(s) 604
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 9 cut(s) 18, 172, 277, 441, 572, 611, 631, 811, 953
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 647
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 2 cut(s) 819, 944
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 2 cut(s) 514, 674
BspACI CCGC 3 cut(s) 427, 707, 910
BspANI GGCC 2 cut(s) 819, 944
BspDI ATCGAT 1 cut(s) 951
BspLI GGNNCC 4 cut(s) 88, 282, 945, 1000
BspOI GCTAGC 1 cut(s) 480
BsrI ACTGG 3 cut(s) 314, 802, 1015
BssECI CCNNGG 3 cut(s) 70, 276, 435
BssMI GATC 2 cut(s) 514, 674
BssT1I CCWWGG 2 cut(s) 276, 435
Bst2UI CCWGG 4 cut(s) 72, 626, 806, 941
Bst4CI ACNGT 2 cut(s) 291, 609
BstC8I GCNNGC 5 cut(s) 55, 268, 461, 478, 668
BstEII GGTNACC 1 cut(s) 800
BstENI CCTNNNNNAGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 725
BstKTI GATC 2 cut(s) 517, 677
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 514, 674
BstMWI GCNNNNNNNGC 3 cut(s) 36, 272, 907
BstNI CCWGG 4 cut(s) 72, 626, 806, 941
BstNSI RCATGY 2 cut(s) 640, 670
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 4 cut(s) 70, 624, 804, 939
BstV1I GCAGC 2 cut(s) 757, 888
BstV2I GAAGAC 1 cut(s) 707
Bsu15I ATCGAT 1 cut(s) 951
BsuRI GGCC 2 cut(s) 819, 944
BsuTUI ATCGAT 1 cut(s) 951
BtsCI GGATG 1 cut(s) 725
BtsIMutI CAGTG 2 cut(s) 321, 614
Cac8I GCNNGC 5 cut(s) 55, 268, 461, 478, 668
CaiI CAGNNNCTG 1 cut(s) 692
Cfr13I GGNCC 4 cut(s) 86, 280, 943, 999
ClaI ATCGAT 1 cut(s) 951
Csp6I GTAC 1 cut(s) 300
CviAII CATG 6 cut(s) 83, 226, 637, 667, 751, 811
CviQI GTAC 1 cut(s) 300
DpnI GATC 2 cut(s) 516, 676
DpnII GATC 2 cut(s) 514, 674
DraIII CACNNNGTG 1 cut(s) 611
EciI GGCGGA 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 276, 435
Eco32I GATATC 1 cut(s) 1016
Eco47I GGWCC 3 cut(s) 86, 280, 999
Eco91I GGTNACC 1 cut(s) 800
EcoNI CCTNNNNNAGG 1 cut(s) 439
EcoO109I RGGNCCY 3 cut(s) 280, 943, 999
EcoO65I GGTNACC 1 cut(s) 800
EcoRII CCWGG 4 cut(s) 70, 624, 804, 939
EcoRV GATATC 1 cut(s) 1016
EcoT14I CCWWGG 2 cut(s) 276, 435
EcoT22I ATGCAT 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 276, 435
FaeI CATG 6 cut(s) 86, 229, 640, 670, 754, 814
FaqI GGGAC 1 cut(s) 647
FatI CATG 6 cut(s) 82, 225, 636, 666, 750, 810
FauNDI CATATG 2 cut(s) 204, 973
Fnu4HI GCNGC 3 cut(s) 6, 746, 902
FokI GGATG 1 cut(s) 712
Fsp4HI GCNGC 3 cut(s) 6, 746, 902
FspBI CTAG 7 cut(s) 18, 158, 167, 309, 477, 711, 960
GluI GCNGC 3 cut(s) 6, 746, 902
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 2 cut(s) 819, 944
Hin1II CATG 6 cut(s) 86, 229, 640, 670, 754, 814
HinfI GANTC 4 cut(s) 75, 118, 237, 488
HphI GGTGA 3 cut(s) 51, 187, 374
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 772
Hpy188III TCNNGA 4 cut(s) 122, 485, 875, 1019
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 3 cut(s) 266, 655, 830
HpyCH4III ACNGT 2 cut(s) 291, 609
HpyCH4V TGCA 8 cut(s) 53, 188, 208, 266, 686, 832, 844, 904
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 272, 907
Hsp92II CATG 6 cut(s) 86, 229, 640, 670, 754, 814
Kzo9I GATC 2 cut(s) 514, 674
LmnI GCTCC 2 cut(s) 607, 795
Lsp1109I GCAGC 2 cut(s) 757, 888
LweI GCATC 1 cut(s) 175
MaeI CTAG 7 cut(s) 18, 158, 167, 309, 477, 711, 960
MaeIII GTNAC 4 cut(s) 502, 551, 697, 800
MalI GATC 2 cut(s) 516, 676
MboI GATC 2 cut(s) 514, 674
MboII GAAGA 3 cut(s) 194, 669, 707
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 5 cut(s) 135, 220, 539, 779, 846
MlyI GAGTC 2 cut(s) 69, 231
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 9 cut(s) 72, 207, 324, 435, 739, 742, 871, 906, 1012
Mph1103I ATGCAT 1 cut(s) 210
MseI TTAA 4 cut(s) 381, 651, 825, 849
MspR9I CCNGG 4 cut(s) 72, 626, 806, 941
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 4 cut(s) 72, 626, 806, 941
MwoI GCNNNNNNNGC 3 cut(s) 36, 272, 907
NdeI CATATG 2 cut(s) 204, 973
NdeII GATC 2 cut(s) 514, 674
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 6 cut(s) 86, 229, 640, 670, 754, 814
NlaIV GGNNCC 4 cut(s) 88, 282, 945, 1000
NmuCI GTSAC 3 cut(s) 502, 551, 697
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 2 cut(s) 640, 670
PaeI GCATGC 1 cut(s) 670
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 118, 488
PflMI CCANNNNNTGG 2 cut(s) 611, 811
PkrI GCNGC 3 cut(s) 7, 747, 903
PleI GAGTC 2 cut(s) 69, 231
PpsI GAGTC 2 cut(s) 69, 231
PpuMI RGGWCCY 2 cut(s) 280, 999
Psp5II RGGWCCY 2 cut(s) 280, 999
Psp6I CCWGG 4 cut(s) 70, 624, 804, 939
PspEI GGTNACC 1 cut(s) 800
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 4 cut(s) 70, 624, 804, 939
PspN4I GGNNCC 4 cut(s) 88, 282, 945, 1000
PspPI GGNCC 4 cut(s) 86, 280, 943, 999
PspPPI RGGWCCY 2 cut(s) 280, 999
PstNI CAGNNNCTG 1 cut(s) 692
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 381, 651, 825, 849
SatI GCNGC 3 cut(s) 6, 746, 902
Sau3AI GATC 2 cut(s) 514, 674
Sau96I GGNCC 4 cut(s) 86, 280, 943, 999
SchI GAGTC 2 cut(s) 69, 231
ScrFI CCNGG 4 cut(s) 72, 626, 806, 941
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 3 cut(s) 86, 280, 999
SmlI CTYRAG 3 cut(s) 77, 231, 875
SmoI CTYRAG 3 cut(s) 77, 231, 875
SphI GCATGC 1 cut(s) 670
Sse9I AATT 5 cut(s) 135, 220, 539, 779, 846
SsiI CCGC 3 cut(s) 427, 707, 910
SspMI CTAG 7 cut(s) 18, 158, 167, 309, 477, 711, 960
StyD4I CCNGG 4 cut(s) 70, 624, 804, 939
StyI CCWWGG 2 cut(s) 276, 435
TaaI ACNGT 2 cut(s) 291, 609
TaqI TCGA 2 cut(s) 420, 951
TasI AATT 5 cut(s) 135, 220, 539, 779, 846
TfiI GAWTC 2 cut(s) 118, 488
Tru1I TTAA 4 cut(s) 381, 651, 825, 849
Tru9I TTAA 4 cut(s) 381, 651, 825, 849
TscAI CASTG 2 cut(s) 321, 614
TseFI GTSAC 3 cut(s) 502, 551, 697
TseI GCWGC 3 cut(s) 5, 745, 901
Tsp45I GTSAC 3 cut(s) 502, 551, 697
TspDTI ATGAA 4 cut(s) 99, 214, 711, 960
TspRI CASTG 2 cut(s) 321, 614
Van91I CCANNNNNTGG 2 cut(s) 611, 811
VpaK11BI GGWCC 3 cut(s) 86, 280, 999
XagI CCTNNNNNAGG 1 cut(s) 439
XapI RAATTY 2 cut(s) 135, 220
XceI RCATGY 2 cut(s) 640, 670
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XspI CTAG 7 cut(s) 18, 158, 167, 309, 477, 711, 960
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.