Rh6DG165100

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001262
Physical Location & Seq
Forward (+)
25306876 .. 25309348
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG165100.1

Sequence Viewer

Length: 711 bp
ATGGCTGCGACTAAGACAAGGACGAGTAGCTTCTCTCGCAGTTTTTCGGGTGCAAGCTCCCCTCAAATCCCAGGACTCAAGCATGGACCCAATGGCACAATGTTTGTTTCATCTGGGATTCCAGACCTTGACAAAATTTTAGGTGGTGGTTTTGCTCTAGGAAGCCTAGTAATGGTGATGGAAGATGCAGAAGCACCTCATCATATGCTTTTACTTAGGAATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGCGGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATACAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAATGGGAAACATGAGTTCAGCAACAACTTCGACTTGCGGAAGCCCTTGGAGAGGCAGTTTCTTACAGGCAAGCGAATAGATTGTGCTAGCATTCTTGATTCTCCAAATCTTGTTCCTGTCATTCTTGAGGCAACAACTTTCTCAATAAAGCTGCAAAAGCGGAGGTTTTTGGTTTTAGAATGTCTAAACCAGGCCCCTATCGATGGTTCTAGTGGGAGTTCATATGGCACTTCTGGTAGTTGTTCTGGGTCCTCTAAAACTGGATATCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

236

Amino Acids

25.77

Weight (kDa)

8.94

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 20 - 166 5.7e-47 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AciI CCGC 3 cut(s) 317, 469, 592
AcsI RAATTY 2 cut(s) 135, 220
AfaI GTAC 2 cut(s) 301, 321
AfiI CCNNNNNNNGG 5 cut(s) 172, 277, 358, 483, 635
AjnI CCWGG 2 cut(s) 70, 621
AluBI AGCT 4 cut(s) 30, 57, 380, 583
AluI AGCT 4 cut(s) 30, 57, 380, 583
Alw26I GTCTC 2 cut(s) 234, 342
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 2 cut(s) 5, 583
ApoI RAATTY 2 cut(s) 135, 220
Asp718I GGTACC 1 cut(s) 319
AspS9I GGNCC 4 cut(s) 86, 280, 625, 681
AsuHPI GGTGA 2 cut(s) 187, 416
AsuNHI GCTAGC 1 cut(s) 518
AvaII GGWCC 3 cut(s) 86, 280, 681
BanI GGYRCC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 570
BccI CCATC 2 cut(s) 172, 629
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 2 cut(s) 72, 623
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 234, 342
BfaI CTAG 6 cut(s) 158, 167, 309, 339, 519, 642
BisI GCNGC 2 cut(s) 6, 584
BlsI GCNGC 2 cut(s) 7, 585
Bme1390I CCNGG 2 cut(s) 72, 623
Bme18I GGWCC 3 cut(s) 86, 280, 681
BmgT120I GGNCC 4 cut(s) 86, 280, 625, 681
BmiI GGNNCC 5 cut(s) 88, 282, 321, 627, 682
BmrFI CCNGG 2 cut(s) 72, 623
BmsI GCATC 1 cut(s) 175
BmtI GCTAGC 1 cut(s) 522
BpuEI CTTGAG 3 cut(s) 62, 216, 578
Bsa29I ATCGAT 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 70, 276, 477
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 473, 503
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 277, 358, 483, 635
Bse1I ACTGG 1 cut(s) 697
BseBI CCWGG 2 cut(s) 72, 623
BseCI ATCGAT 1 cut(s) 633
BseDI CCNNGG 3 cut(s) 70, 276, 477
BseLI CCNNNNNNNGG 5 cut(s) 172, 277, 358, 483, 635
BseNI ACTGG 1 cut(s) 697
BseXI GCAGC 1 cut(s) 570
BseYI CCCAGC 1 cut(s) 271
BshFI GGCC 1 cut(s) 626
BshNI GGYRCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 633
BslI CCNNNNNNNGG 5 cut(s) 172, 277, 358, 483, 635
BsmAI GTCTC 2 cut(s) 234, 342
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 1 cut(s) 626
Bso31I GGTCTC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 3 cut(s) 317, 469, 592
BspANI GGCC 1 cut(s) 626
BspDI ATCGAT 1 cut(s) 633
BspLI GGNNCC 5 cut(s) 88, 282, 321, 627, 682
BspOI GCTAGC 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 697
BssECI CCNNGG 3 cut(s) 70, 276, 477
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 2 cut(s) 276, 477
Bst2UI CCWGG 2 cut(s) 72, 623
Bst4CI ACNGT 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 55, 268, 503, 520
BstDEI CTNAG 2 cut(s) 12, 215
BstENI CCTNNNNNAGG 1 cut(s) 481
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 2 cut(s) 234, 342
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 3 cut(s) 36, 272, 589
BstNI CCWGG 2 cut(s) 72, 623
BstSCI CCNGG 2 cut(s) 70, 621
BstV1I GCAGC 1 cut(s) 570
Bsu15I ATCGAT 1 cut(s) 633
BsuRI GGCC 1 cut(s) 626
BsuTUI ATCGAT 1 cut(s) 633
Cac8I GCNNGC 4 cut(s) 55, 268, 503, 520
Cfr13I GGNCC 4 cut(s) 86, 280, 625, 681
ClaI ATCGAT 1 cut(s) 633
Csp6I GTAC 2 cut(s) 300, 320
CviAII CATG 3 cut(s) 83, 226, 443
CviQI GTAC 2 cut(s) 300, 320
DdeI CTNAG 2 cut(s) 12, 215
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 276, 477
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 698
Eco47I GGWCC 3 cut(s) 86, 280, 681
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 3 cut(s) 280, 625, 681
EcoRII CCWGG 2 cut(s) 70, 621
EcoRV GATATC 1 cut(s) 698
EcoT14I CCWWGG 2 cut(s) 276, 477
ErhI CCWWGG 2 cut(s) 276, 477
FaeI CATG 3 cut(s) 86, 229, 446
FaiI YATR 8 cut(s) 84, 204, 206, 227, 264, 444, 655, 657
FatI CATG 3 cut(s) 82, 225, 442
FauNDI CATATG 2 cut(s) 204, 655
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 6, 584
Fsp4HI GCNGC 2 cut(s) 6, 584
FspBI CTAG 6 cut(s) 158, 167, 309, 339, 519, 642
GluI GCNGC 2 cut(s) 6, 584
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 626
Hin1II CATG 3 cut(s) 86, 229, 446
HinfI GANTC 4 cut(s) 75, 118, 237, 530
HphI GGTGA 2 cut(s) 187, 416
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 6 cut(s) 122, 347, 359, 527, 557, 701
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 53, 188, 266, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 272, 589
HpyF3I CTNAG 2 cut(s) 12, 215
Hsp92II CATG 3 cut(s) 86, 229, 446
KpnI GGTACC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 1 cut(s) 175
MaeI CTAG 6 cut(s) 158, 167, 309, 339, 519, 642
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 1 cut(s) 194
MluCI AATT 2 cut(s) 135, 220
MlyI GAGTC 2 cut(s) 69, 231
MnlI CCTC 7 cut(s) 72, 207, 366, 477, 553, 588, 694
MspA1I CMGCKG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 72, 623
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 2 cut(s) 72, 623
MwoI GCNNNNNNNGC 3 cut(s) 36, 272, 589
NdeI CATATG 2 cut(s) 204, 655
NdeII GATC 1 cut(s) 355
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 3 cut(s) 86, 229, 446
NlaIV GGNNCC 5 cut(s) 88, 282, 321, 627, 682
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 118, 530
PkrI GCNGC 2 cut(s) 7, 585
PleI GAGTC 2 cut(s) 69, 231
PpsI GAGTC 2 cut(s) 69, 231
PpuMI RGGWCCY 2 cut(s) 280, 681
Psp5II RGGWCCY 2 cut(s) 280, 681
Psp6I CCWGG 2 cut(s) 70, 621
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 2 cut(s) 70, 621
PspN4I GGNNCC 5 cut(s) 88, 282, 321, 627, 682
PspPI GGNCC 4 cut(s) 86, 280, 625, 681
PspPPI RGGWCCY 2 cut(s) 280, 681
RsaI GTAC 2 cut(s) 301, 321
RsaNI GTAC 2 cut(s) 300, 320
SatI GCNGC 2 cut(s) 6, 584
Sau3AI GATC 1 cut(s) 355
Sau96I GGNCC 4 cut(s) 86, 280, 625, 681
SchI GAGTC 2 cut(s) 69, 231
ScrFI CCNGG 2 cut(s) 72, 623
SetI ASST 8 cut(s) 32, 59, 129, 145, 199, 382, 585, 599
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 3 cut(s) 86, 280, 681
SmlI CTYRAG 3 cut(s) 77, 231, 557
SmoI CTYRAG 3 cut(s) 77, 231, 557
Sse9I AATT 2 cut(s) 135, 220
SsiI CCGC 3 cut(s) 317, 469, 592
SspMI CTAG 6 cut(s) 158, 167, 309, 339, 519, 642
StyD4I CCNGG 2 cut(s) 70, 621
StyI CCWWGG 2 cut(s) 276, 477
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 346, 462, 633
TasI AATT 2 cut(s) 135, 220
TfiI GAWTC 2 cut(s) 118, 530
TseI GCWGC 2 cut(s) 5, 583
TspDTI ATGAA 4 cut(s) 99, 214, 345, 642
VpaK11BI GGWCC 3 cut(s) 86, 280, 681
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 2 cut(s) 135, 220
XspI CTAG 6 cut(s) 158, 167, 309, 339, 519, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.