Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001262

Physical Location & Seq

Genomic Coordinates Reverse (-)

81899399 .. 81901625

Gene Structure 2227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG587100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCAATTTCTTACTGAGGGGAAAGAAGAGGTTAAGGTTGTAAAACTAAAAGCTTTCTCCAAGTTTGAGAATATGTCGATACAAGCTCAAGTTCAAAGTGACAACAACATTTCTTGTGTTGGTCGTATTGCCATTCAATCATTCTGTGTTCCACAGTGTGGTTATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAGACCTCTAAAAAGCATGCTACAATCTTCAATGCAGTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAXNEB

Protein Analysis

80

Amino Acids

9.1

Weight (kDa)

7.69

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAXNEB	PF05625	26 - 75	2.6e-07	PAXNEB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11220 AT3G11220
fragaria_vesca	FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_7g07230 FvH4_7g07230
malus_domestica	MD01G1042400.v1.1 MD01G1042700.v1.1
prunus_persica	Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.6G206700_v2.0.a1
pyrus_communis	pycom01g06960
rosa_chinensis	RchiOBHm_Chr2g0110581 RchiOBHm_Chr6g0270301 RchiOBHm_Chr6g0270401
rosa_laevigata	RLG00000013794 RLG00000013800 RLG00000017812 RLG00000017814 RLG00000017817 RLG00000017818 RLG00000017820 RLG00000017823 RLG00000017826
rosa_multiflora	Rmu_sc0009479.1_g000015
rosa_roxburghii	Rroxscaffold_2G00133130 Rroxscaffold_7G00198000
rosa_rugosa	Rorug06G0054200 Rorug06G0054300 Rorug06G0054400 Rorug06G0054500
rosa_samantha	Rh1DG006700 Rh2AG220300 Rh2AG587100 Rh2CG222800 Rh2DG226300 Rh2DG226700 Rh6AG172800 Rh6AG173200 Rh6BG177100 Rh6DG164600 Rh6DG165100
rosa_wichuraiana	Rw0G006780 Rw0G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	158, 178
AgsI	TTSAA	3 cut(s)	95, 137, 228
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	53, 86
AluI	AGCT	2 cut(s)	53, 86
BciT130I	CCWGG	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 178
BseBI	CCWGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	158, 178
BseMII	CTCAG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	158, 178
BsmFI	GGGAC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	15, 197
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	2 cut(s)	187, 217
BstSCI	CCNGG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	184, 214
CviJI	RGCY	3 cut(s)	53, 86, 171
CviKI_1	RGCY	3 cut(s)	53, 86, 171
DdeI	CTNAG	2 cut(s)	15, 197
DraIII	CACNNNGTG	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	187, 217
FaiI	YATR	3 cut(s)	74, 185, 215
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	183, 213
Hin1II	CATG	2 cut(s)	187, 217
HindIII	AAGCTT	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	4, 232
HpyF3I	CTNAG	2 cut(s)	15, 197
Hsp92II	CATG	2 cut(s)	187, 217
LpnPI	CCDG	3 cut(s)	158, 181, 185
MaeIII	GTNAC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	38, 216
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	3 cut(s)	10, 22, 213
MseI	TTAA	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NlaIII	CATG	2 cut(s)	187, 217
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	2 cut(s)	187, 217
PaeI	GCATGC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	173
SetI	ASST	5 cut(s)	33, 39, 55, 88, 205
SgeI	CNNG	9 cut(s)	73, 95, 101, 126, 180, 184, 185, 196, 226
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	161
Van91I	CCANNNNNTGG	1 cut(s)	158
XceI	RCATGY	2 cut(s)	187, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.