Rmu_sc0009479.1_g000015

Elongator complex protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009479.1
Physical Location & Seq
Reverse (-)
85934 .. 89114
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009479.1_g000015.1.cds

Sequence Viewer

Length: 1425 bp
atgtcaaatcttgagctgaaaccgaagcgatcaaaattcatacatacatggtttcaaagaacaaatgttgagtcttcaagttcaaatgtgatttctgaaccttccatatcctctccaaatattgatgttgaacctccaccttctattcctgaaccaaatattgatgttgaacctccaccttccattcctgaaccacaaaataatatgaatgctcttgaacgtgatcctggattacgttgtgccatatggaaatatccagtgaatgagcgtgatagaaagagctccaggctttggttggaagcactgattgagagtttggagagtgttttggcagccatggctgcgaccaagactaggacgagtagcttctctcgcagttttttgggtgcaagctcacctcaaatcccaggactcaagcatggacccaatggcacaatgtttgtttcatctgggattccagaccttgacaaaattttaggtggtggttttgctctaggaagcctagtaatggtgatggaagatgcagaagcacctcatcatatgcttttacttaggaatttcatgtctcaaggactcgttcacaaccaaccccttctctatgcaagcccagccaaggacccaagacagtttcttggtactttgcctagtccagcggtacccaaagatgaaaagtctagtcatcgagaccctgatcaggagaaagggttgaggatagcttggcaatacaagaagtattttggtgaaaatcagcagggttttgatagtcaaaatgggaaacatgagttcagcaacaacttcgacttgcggaagcccttggagaggcagtttcttacaggcaagcgaatagattgtgctagcattcttgattctccaaatcttgtcacactttatgatcgttgtgctacatttttatcacaatttccaagaagtgacagcaacatttcttgtgttggtcgtattgccattcaatcattctgtgctccacagtgtggatattccagcctggaatgggacatgctttccttccttagatctctaaaaagcatgctacgatattcaaatgcagttgctgttgtgacatttccgcctagtcttctttcatcctcttcctctacaagatggcagcacatggcagacaccttgctgtcagttaaagcaattccagatgaggacaaggaattggcaacgctccttactggttaccaggacatggttggccttcttaatgtgcagaaagtagcgcaaattaacacacaggttcctgtcattcttgaggcaacaactttctcaataaagctgcaaaagcggaggtttttggttttagaatgtctaaaccaggcccctatcgatggttctagtgggagttcatatggcacttctggtagttgttctgggtcctctaaaactggatatcttgatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

52.4

Weight (kDa)

7.07

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 655
AccB1I GGYRCC 1 cut(s) 655
AccB7I CCANNNNNTGG 3 cut(s) 291, 989, 1210
AciI CCGC 4 cut(s) 653, 805, 1085, 1306
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 3 cut(s) 35, 471, 556
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 2 cut(s) 637, 657
AgsI TTSAA 8 cut(s) 56, 78, 84, 131, 170, 218, 968, 1059
AjnI CCWGG 6 cut(s) 226, 284, 406, 1002, 1203, 1335
AluBI AGCT 6 cut(s) 16, 282, 366, 393, 716, 1297
AluI AGCT 6 cut(s) 16, 282, 366, 393, 716, 1297
Alw21I GWGCWC 2 cut(s) 284, 982
Alw26I GTCTC 2 cut(s) 570, 678
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 1070
AoxI GGCC 2 cut(s) 1216, 1338
ApeKI GCWGC 4 cut(s) 332, 341, 1123, 1297
ApoI RAATTY 3 cut(s) 35, 471, 556
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Asp718I GGTACC 1 cut(s) 655
AspLEI GCGC 1 cut(s) 1243
AspS9I GGNCC 4 cut(s) 422, 616, 1339, 1395
AsuHPI GGTGA 3 cut(s) 387, 523, 752
AsuNHI GCTAGC 1 cut(s) 854
AvaII GGWCC 3 cut(s) 422, 616, 1395
BanI GGYRCC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 66, 1085
Bbv12I GWGCWC 2 cut(s) 284, 982
BbvI GCAGC 4 cut(s) 328, 344, 1135, 1284
BccI CCATC 3 cut(s) 508, 1113, 1343
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 2 cut(s) 570, 678
BfaI CTAG 8 cut(s) 354, 494, 503, 645, 675, 855, 1089, 1356
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 4 cut(s) 333, 342, 1124, 1298
BlsI GCNGC 4 cut(s) 334, 343, 1125, 1299
Bme1390I CCNGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
Bme18I GGWCC 3 cut(s) 422, 616, 1395
BmgT120I GGNCC 4 cut(s) 422, 616, 1339, 1395
BmiI GGNNCC 6 cut(s) 424, 618, 657, 1260, 1341, 1396
BmrFI CCNGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
BmsI GCATC 1 cut(s) 511
BmtI GCTAGC 1 cut(s) 858
BpiI GAAGAC 2 cut(s) 66, 1085
BpmI CTGGAG 1 cut(s) 268
BpuEI CTTGAG 4 cut(s) 32, 398, 552, 1292
Bsa29I ATCGAT 1 cut(s) 1347
BsaI GGTCTC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 336, 406, 612, 813
BsaXI ACNNNNNCTCC 4 cut(s) 689, 719, 809, 839
Bse1I ACTGG 3 cut(s) 257, 1201, 1411
BseBI CCWGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
BseCI ATCGAT 1 cut(s) 1347
BseDI CCNNGG 4 cut(s) 336, 406, 612, 813
BseGI GGATG 1 cut(s) 1100
BseNI ACTGG 3 cut(s) 257, 1201, 1411
BseXI GCAGC 4 cut(s) 328, 344, 1135, 1284
BseYI CCCAGC 1 cut(s) 607
BsgI GTGCAG 1 cut(s) 1250
BshFI GGCC 2 cut(s) 1218, 1340
BshNI GGYRCC 1 cut(s) 655
BshVI ATCGAT 1 cut(s) 1347
BsiHKAI GWGCWC 2 cut(s) 284, 982
BslFI GGGAC 1 cut(s) 1025
BsmAI GTCTC 2 cut(s) 570, 678
BsmFI GGGAC 1 cut(s) 1025
BsmI GAATGC 2 cut(s) 214, 858
BsnI GGCC 2 cut(s) 1218, 1340
Bso31I GGTCTC 1 cut(s) 678
Bsp1286I GDGCHC 2 cut(s) 284, 982
Bsp143I GATC 5 cut(s) 29, 223, 691, 892, 1031
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 4 cut(s) 653, 805, 1085, 1306
BspANI GGCC 2 cut(s) 1218, 1340
BspDI ATCGAT 1 cut(s) 1347
BspLI GGNNCC 6 cut(s) 424, 618, 657, 1260, 1341, 1396
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 655
BspTNI GGTCTC 1 cut(s) 678
BsrI ACTGG 3 cut(s) 257, 1201, 1411
BssECI CCNNGG 4 cut(s) 336, 406, 612, 813
BssMI GATC 5 cut(s) 29, 223, 691, 892, 1031
BssT1I CCWWGG 3 cut(s) 336, 612, 813
Bst2UI CCWGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
Bst4CI ACNGT 2 cut(s) 627, 987
Bst6I CTCTTC 1 cut(s) 1111
BstC8I GCNNGC 5 cut(s) 391, 604, 839, 856, 1046
BstDEI CTNAG 2 cut(s) 551, 1028
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 1 cut(s) 1199
BstENI CCTNNNNNAGG 1 cut(s) 817
BstF5I GGATG 1 cut(s) 1100
BstHHI GCGC 1 cut(s) 1243
BstKTI GATC 5 cut(s) 32, 226, 694, 895, 1034
BstMAI GTCTC 2 cut(s) 570, 678
BstMBI GATC 5 cut(s) 29, 223, 691, 892, 1031
BstMWI GCNNNNNNNGC 5 cut(s) 338, 341, 372, 608, 1303
BstNI CCWGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
BstNSI RCATGY 2 cut(s) 1018, 1048
BstPI GGTNACC 1 cut(s) 1199
BstSCI CCNGG 6 cut(s) 226, 284, 406, 1002, 1203, 1335
BstV1I GCAGC 4 cut(s) 328, 344, 1135, 1284
BstV2I GAAGAC 2 cut(s) 66, 1085
BstX2I RGATCY 1 cut(s) 1031
BstYI RGATCY 1 cut(s) 1031
Bsu15I ATCGAT 1 cut(s) 1347
BsuRI GGCC 2 cut(s) 1218, 1340
BsuTUI ATCGAT 1 cut(s) 1347
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 1100
BtsIMutI CAGTG 3 cut(s) 264, 302, 992
Cac8I GCNNGC 5 cut(s) 391, 604, 839, 856, 1046
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 1 cut(s) 1243
Cfr13I GGNCC 4 cut(s) 422, 616, 1339, 1395
ClaI ATCGAT 1 cut(s) 1347
Csp6I GTAC 2 cut(s) 636, 656
CviAII CATG 9 cut(s) 48, 337, 419, 562, 779, 1015, 1045, 1129, 1210
CviQI GTAC 2 cut(s) 636, 656
DdeI CTNAG 2 cut(s) 551, 1028
DpnI GATC 5 cut(s) 31, 225, 693, 894, 1033
DpnII GATC 5 cut(s) 29, 223, 691, 892, 1031
DraIII CACNNNGTG 1 cut(s) 989
Eam1104I CTCTTC 1 cut(s) 1111
EarI CTCTTC 1 cut(s) 1111
EciI GGCGGA 1 cut(s) 1074
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 3 cut(s) 336, 612, 813
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 678
Eco32I GATATC 1 cut(s) 1412
Eco47I GGWCC 3 cut(s) 422, 616, 1395
Eco53kI GAGCTC 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 1199
EcoICRI GAGCTC 1 cut(s) 282
EcoNI CCTNNNNNAGG 1 cut(s) 817
EcoO109I RGGNCCY 3 cut(s) 616, 1339, 1395
EcoO65I GGTNACC 1 cut(s) 1199
EcoRII CCWGG 6 cut(s) 226, 284, 406, 1002, 1203, 1335
EcoRV GATATC 1 cut(s) 1412
EcoT14I CCWWGG 3 cut(s) 336, 612, 813
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 3 cut(s) 336, 612, 813
FaeI CATG 9 cut(s) 51, 340, 422, 565, 782, 1018, 1048, 1132, 1213
FaqI GGGAC 1 cut(s) 1025
FatI CATG 9 cut(s) 47, 336, 418, 561, 778, 1014, 1044, 1128, 1209
FauNDI CATATG 3 cut(s) 245, 540, 1369
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 333, 342, 1124, 1298
FokI GGATG 1 cut(s) 1087
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 4 cut(s) 333, 342, 1124, 1298
FspBI CTAG 8 cut(s) 354, 494, 503, 645, 675, 855, 1089, 1356
GlaI GCGC 1 cut(s) 1242
GluI GCNGC 4 cut(s) 333, 342, 1124, 1298
GsaI CCCAGC 1 cut(s) 611
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 2 cut(s) 1218, 1340
HhaI GCGC 1 cut(s) 1243
Hin1II CATG 9 cut(s) 51, 340, 422, 565, 782, 1018, 1048, 1132, 1213
Hin6I GCGC 1 cut(s) 1241
HinP1I GCGC 1 cut(s) 1241
HinfI GANTC 5 cut(s) 71, 411, 454, 573, 866
HphI GGTGA 3 cut(s) 387, 523, 752
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 580
HpyAV CCTTC 6 cut(s) 111, 150, 189, 602, 1033, 1229
HpyCH4III ACNGT 2 cut(s) 627, 987
HpyCH4IV ACGT 2 cut(s) 220, 235
HpyCH4V TGCA 6 cut(s) 389, 524, 602, 1064, 1231, 1300
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 341, 372, 608, 1303
HpyF3I CTNAG 2 cut(s) 551, 1028
HpySE526I ACGT 2 cut(s) 220, 235
Hsp92II CATG 9 cut(s) 51, 340, 422, 565, 782, 1018, 1048, 1132, 1213
HspAI GCGC 1 cut(s) 1241
KpnI GGTACC 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 5 cut(s) 29, 223, 691, 892, 1031
LmnI GCTCC 3 cut(s) 287, 985, 1194
Lsp1109I GCAGC 4 cut(s) 328, 344, 1135, 1284
LweI GCATC 1 cut(s) 511
MaeI CTAG 8 cut(s) 354, 494, 503, 645, 675, 855, 1089, 1356
MaeII ACGT 2 cut(s) 220, 235
MaeIII GTNAC 4 cut(s) 880, 929, 1075, 1199
MalI GATC 5 cut(s) 31, 225, 693, 894, 1033
MboI GATC 5 cut(s) 29, 223, 691, 892, 1031
MboII GAAGA 4 cut(s) 66, 530, 1085, 1098
MflI RGATCY 1 cut(s) 1031
MhlI GDGCHC 2 cut(s) 284, 982
MluCI AATT 7 cut(s) 35, 471, 556, 917, 1158, 1178, 1245
MlyI GAGTC 3 cut(s) 80, 405, 567
MmeI TCCRAC 1 cut(s) 276
MseI TTAA 3 cut(s) 1152, 1224, 1248
MspA1I CMGCKG 1 cut(s) 653
MspR9I CCNGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
Mva1269I GAATGC 2 cut(s) 214, 858
MvaI CCWGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
MwoI GCNNNNNNNGC 5 cut(s) 338, 341, 372, 608, 1303
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 3 cut(s) 245, 540, 1369
NdeII GATC 5 cut(s) 29, 223, 691, 892, 1031
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 9 cut(s) 51, 340, 422, 565, 782, 1018, 1048, 1132, 1213
NlaIV GGNNCC 6 cut(s) 424, 618, 657, 1260, 1341, 1396
NmuCI GTSAC 3 cut(s) 880, 929, 1075
NspI RCATGY 2 cut(s) 1018, 1048
PaeI GCATGC 1 cut(s) 1048
PctI GAATGC 2 cut(s) 214, 858
PfeI GAWTC 2 cut(s) 454, 866
PflMI CCANNNNNTGG 3 cut(s) 291, 989, 1210
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 4 cut(s) 334, 343, 1125, 1299
PleI GAGTC 3 cut(s) 79, 405, 567
PpsI GAGTC 3 cut(s) 79, 405, 567
PpuMI RGGWCCY 2 cut(s) 616, 1395
Psp124BI GAGCTC 1 cut(s) 284
Psp5II RGGWCCY 2 cut(s) 616, 1395
Psp6I CCWGG 6 cut(s) 226, 284, 406, 1002, 1203, 1335
PspEI GGTNACC 1 cut(s) 1199
PspFI CCCAGC 1 cut(s) 607
PspGI CCWGG 6 cut(s) 226, 284, 406, 1002, 1203, 1335
PspN4I GGNNCC 6 cut(s) 424, 618, 657, 1260, 1341, 1396
PspPI GGNCC 4 cut(s) 422, 616, 1339, 1395
PspPPI RGGWCCY 2 cut(s) 616, 1395
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 1031
RsaI GTAC 2 cut(s) 637, 657
RsaNI GTAC 2 cut(s) 636, 656
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 1152, 1224, 1248
SatI GCNGC 4 cut(s) 333, 342, 1124, 1298
Sau3AI GATC 5 cut(s) 29, 223, 691, 892, 1031
Sau96I GGNCC 4 cut(s) 422, 616, 1339, 1395
SchI GAGTC 3 cut(s) 80, 405, 567
ScrFI CCNGG 6 cut(s) 228, 286, 408, 1004, 1205, 1337
SduI GDGCHC 2 cut(s) 284, 982
SfaNI GCATC 1 cut(s) 511
SinI GGWCC 3 cut(s) 422, 616, 1395
SmlI CTYRAG 4 cut(s) 11, 413, 567, 1271
SmoI CTYRAG 4 cut(s) 11, 413, 567, 1271
SphI GCATGC 1 cut(s) 1048
Sse9I AATT 7 cut(s) 35, 471, 556, 917, 1158, 1178, 1245
SsiI CCGC 4 cut(s) 653, 805, 1085, 1306
SspI AATATT 2 cut(s) 121, 160
SspMI CTAG 8 cut(s) 354, 494, 503, 645, 675, 855, 1089, 1356
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 6 cut(s) 226, 284, 406, 1002, 1203, 1335
StyI CCWWGG 3 cut(s) 336, 612, 813
TaaI ACNGT 2 cut(s) 627, 987
TaiI ACGT 2 cut(s) 223, 238
TaqI TCGA 3 cut(s) 682, 798, 1347
TasI AATT 7 cut(s) 35, 471, 556, 917, 1158, 1178, 1245
TfiI GAWTC 2 cut(s) 454, 866
Tru1I TTAA 3 cut(s) 1152, 1224, 1248
Tru9I TTAA 3 cut(s) 1152, 1224, 1248
TscAI CASTG 3 cut(s) 264, 309, 992
TseFI GTSAC 3 cut(s) 880, 929, 1075
TseI GCWGC 4 cut(s) 332, 341, 1123, 1297
Tsp45I GTSAC 3 cut(s) 880, 929, 1075
TspDTI ATGAA 7 cut(s) 28, 221, 435, 550, 681, 1089, 1356
TspRI CASTG 3 cut(s) 264, 309, 992
Van91I CCANNNNNTGG 3 cut(s) 291, 989, 1210
VpaK11BI GGWCC 3 cut(s) 422, 616, 1395
XagI CCTNNNNNAGG 1 cut(s) 817
XapI RAATTY 3 cut(s) 35, 471, 556
XceI RCATGY 2 cut(s) 1018, 1048
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 1211
XspI CTAG 8 cut(s) 354, 494, 503, 645, 675, 855, 1089, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.