RLG00000017812

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001262
Physical Location & Seq
Reverse (-)
21609785 .. 21655468
45684 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017812

Sequence Viewer

Length: 1023 bp
ATGGCTGCAACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTTGGGTGCAAGCTCCCCTCAAATCCCAGGACTCAAGCATGGACCCAATGGCACAATAAATATTAGGTGGTGGTTTTGCTCTAGGAAGCCTAGTAACGGTGATGGAAGATGCGAAGCACCTCATCATATGCTTTTACTTAGGAATTTCATGTCTCAAGGACTCGTTCACAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAAGACAGTTTCTTGGTACTTTGCCTAGTCCAGCCGTACCCAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATACAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAATGGGAAACATGAGTTGTGCAACAACTTTGACTTGCGGAAGCCCTTGGAGAGGCACATTCTCGATTCTCCAAATCTTGTGACACTTTATGATCGTTGTGCTACATTTTTATCACAATTTCCAAGAAGTGACAGCAACATTTCTTGTGTTGGTCGTATTGCCATTCAATCATTCTGTGCTCCACAGTGTGGATATTCCAGCCTGGAATGGGACATGCTTTCCTTCCTTAGATCTCTAAAAACCATGCTACGATCTTCAAATGCAGTTGCTGTTGTGACATTTCCACCTAGTCTTCTTTCATCATCCTCCTCTACAAGATGGCAGCACATGGCAGACACCTTGCTGTCAGTTAAAGCAATTCCAGATGAGAACAAGGAATTGGCAATGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAGCGCAAATTAACACACAGGTTCCTGTCATTCTTGAGGCAACAACCTTCTCAATAAAGCTGCAAAAGCGGAGGTTTTTGGTTTTAGAGTGTCTAAACCAGGCCTCTATCCATGGTTCTAGTGGGAGTTCATATGGCACTTCTAGGAGTTGTGCTGGGTCCTCTAAAACTAGATATCTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAXNEB

Protein Analysis

341

Amino Acids

37.94

Weight (kDa)

9.42

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 54 - 340 2.3e-66 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 587, 808
AciI CCGC 2 cut(s) 436, 904
AcsI RAATTY 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 2 cut(s) 268, 288
AfiI CCNNNNNNNGG 8 cut(s) 18, 140, 244, 325, 450, 587, 607, 808
AgsI TTSAA 2 cut(s) 566, 657
AjnI CCWGG 4 cut(s) 70, 600, 801, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 4 cut(s) 30, 57, 347, 895
AluI AGCT 4 cut(s) 30, 57, 347, 895
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 201, 309
AlwNI CAGNNNCTG 1 cut(s) 668
AoxI GGCC 2 cut(s) 814, 936
ApeKI GCWGC 3 cut(s) 5, 721, 895
ApoI RAATTY 1 cut(s) 187
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 3 cut(s) 86, 247, 993
AsuHPI GGTGA 2 cut(s) 155, 383
AvaII GGWCC 3 cut(s) 86, 247, 993
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 733, 882
BccI CCATC 2 cut(s) 140, 711
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 4 cut(s) 72, 602, 803, 935
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 201, 309
BfaI CTAG 9 cut(s) 18, 126, 135, 276, 306, 687, 954, 978, 1005
BglII AGATCT 1 cut(s) 629
BisI GCNGC 3 cut(s) 6, 722, 896
BlsI GCNGC 3 cut(s) 7, 723, 897
Bme1390I CCNGG 4 cut(s) 72, 602, 803, 935
Bme18I GGWCC 3 cut(s) 86, 247, 993
BmgT120I GGNCC 3 cut(s) 86, 247, 993
BmiI GGNNCC 4 cut(s) 88, 249, 858, 994
BmrFI CCNGG 4 cut(s) 72, 602, 803, 935
BmsI GCATC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 683
BpuEI CTTGAG 3 cut(s) 62, 183, 890
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 70, 243, 444, 946
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 8 cut(s) 18, 140, 244, 325, 450, 587, 607, 808
Bse1I ACTGG 1 cut(s) 799
Bse3DI GCAATG 1 cut(s) 789
BseBI CCWGG 4 cut(s) 72, 602, 803, 935
BseDI CCNNGG 4 cut(s) 70, 243, 444, 946
BseGI GGATG 1 cut(s) 701
BseLI CCNNNNNNNGG 8 cut(s) 18, 140, 244, 325, 450, 587, 607, 808
BseMI GCAATG 1 cut(s) 789
BseNI ACTGG 1 cut(s) 799
BseRI GAGGAG 1 cut(s) 697
BseXI GCAGC 2 cut(s) 733, 882
BseYI CCCAGC 2 cut(s) 238, 989
BsgI GTGCAG 1 cut(s) 848
BshFI GGCC 2 cut(s) 816, 938
BsiHKAI GWGCWC 1 cut(s) 580
BslFI GGGAC 1 cut(s) 623
BslI CCNNNNNNNGG 8 cut(s) 18, 140, 244, 325, 450, 587, 607, 808
BsmAI GTCTC 2 cut(s) 201, 309
BsmFI GGGAC 1 cut(s) 623
BsnI GGCC 2 cut(s) 816, 938
Bso31I GGTCTC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 4 cut(s) 322, 490, 629, 650
Bsp19I CCATGG 1 cut(s) 946
BspACI CCGC 2 cut(s) 436, 904
BspANI GGCC 2 cut(s) 816, 938
BspLI GGNNCC 4 cut(s) 88, 249, 858, 994
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 789
BsrI ACTGG 1 cut(s) 799
BssECI CCNNGG 4 cut(s) 70, 243, 444, 946
BssMI GATC 4 cut(s) 322, 490, 629, 650
BssT1I CCWWGG 3 cut(s) 243, 444, 946
Bst2UI CCWGG 4 cut(s) 72, 602, 803, 935
Bst4CI ACNGT 3 cut(s) 143, 258, 585
BstC8I GCNNGC 2 cut(s) 55, 235
BstDEI CTNAG 2 cut(s) 182, 626
BstDSI CCRYGG 1 cut(s) 946
BstEII GGTNACC 1 cut(s) 797
BstENI CCTNNNNNAGG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 701
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 4 cut(s) 325, 493, 632, 653
BstMAI GTCTC 2 cut(s) 201, 309
BstMBI GATC 4 cut(s) 322, 490, 629, 650
BstMWI GCNNNNNNNGC 3 cut(s) 36, 239, 901
BstNI CCWGG 4 cut(s) 72, 602, 803, 935
BstNSI RCATGY 1 cut(s) 616
BstPI GGTNACC 1 cut(s) 797
BstSCI CCNGG 4 cut(s) 70, 600, 801, 933
BstV1I GCAGC 2 cut(s) 733, 882
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 2 cut(s) 816, 938
BtgI CCRYGG 1 cut(s) 946
BtsCI GGATG 1 cut(s) 701
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 2 cut(s) 55, 235
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 3 cut(s) 86, 247, 993
Csp6I GTAC 2 cut(s) 267, 287
CviAII CATG 8 cut(s) 83, 193, 410, 613, 643, 727, 808, 947
CviQI GTAC 2 cut(s) 267, 287
DdeI CTNAG 2 cut(s) 182, 626
DpnI GATC 4 cut(s) 324, 492, 631, 652
DpnII GATC 4 cut(s) 322, 490, 629, 650
DraIII CACNNNGTG 1 cut(s) 587
Eco130I CCWWGG 3 cut(s) 243, 444, 946
Eco147I AGGCCT 1 cut(s) 938
Eco31I GGTCTC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 1010
Eco47I GGWCC 3 cut(s) 86, 247, 993
Eco91I GGTNACC 1 cut(s) 797
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoO109I RGGNCCY 2 cut(s) 247, 993
EcoO65I GGTNACC 1 cut(s) 797
EcoRII CCWGG 4 cut(s) 70, 600, 801, 933
EcoRV GATATC 1 cut(s) 1010
EcoT14I CCWWGG 3 cut(s) 243, 444, 946
ErhI CCWWGG 3 cut(s) 243, 444, 946
FaeI CATG 8 cut(s) 86, 196, 413, 616, 646, 730, 811, 950
FaqI GGGAC 1 cut(s) 623
FatI CATG 8 cut(s) 82, 192, 409, 612, 642, 726, 807, 946
FauNDI CATATG 2 cut(s) 171, 967
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 6, 722, 896
FokI GGATG 1 cut(s) 688
Fsp4HI GCNGC 3 cut(s) 6, 722, 896
FspBI CTAG 9 cut(s) 18, 126, 135, 276, 306, 687, 954, 978, 1005
GlaI GCGC 1 cut(s) 840
GluI GCNGC 3 cut(s) 6, 722, 896
GsaI CCCAGC 2 cut(s) 242, 993
HaeIII GGCC 2 cut(s) 816, 938
HhaI GCGC 1 cut(s) 841
Hin1II CATG 8 cut(s) 86, 196, 413, 616, 646, 730, 811, 950
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HinfI GANTC 3 cut(s) 75, 204, 464
HphI GGTGA 2 cut(s) 155, 383
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 6 cut(s) 314, 326, 461, 761, 869, 1013
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 4 cut(s) 233, 631, 827, 892
HpyCH4III ACNGT 3 cut(s) 143, 258, 585
HpyCH4V TGCA 7 cut(s) 8, 53, 233, 420, 662, 829, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 239, 901
HpyF3I CTNAG 2 cut(s) 182, 626
Hsp92II CATG 8 cut(s) 86, 196, 413, 616, 646, 730, 811, 950
HspAI GCGC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 322, 490, 629, 650
LmnI GCTCC 3 cut(s) 62, 583, 792
Lsp1109I GCAGC 2 cut(s) 733, 882
LweI GCATC 1 cut(s) 143
MaeI CTAG 9 cut(s) 18, 126, 135, 276, 306, 687, 954, 978, 1005
MaeIII GTNAC 5 cut(s) 137, 478, 527, 673, 797
MalI GATC 4 cut(s) 324, 492, 631, 652
MboI GATC 4 cut(s) 322, 490, 629, 650
MboII GAAGA 3 cut(s) 162, 645, 683
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 5 cut(s) 187, 515, 756, 776, 843
MlyI GAGTC 2 cut(s) 69, 198
MseI TTAA 3 cut(s) 750, 822, 846
MspR9I CCNGG 4 cut(s) 72, 602, 803, 935
MvaI CCWGG 4 cut(s) 72, 602, 803, 935
MwoI GCNNNNNNNGC 3 cut(s) 36, 239, 901
NcoI CCATGG 1 cut(s) 946
NdeI CATATG 2 cut(s) 171, 967
NdeII GATC 4 cut(s) 322, 490, 629, 650
NlaIII CATG 8 cut(s) 86, 196, 413, 616, 646, 730, 811, 950
NlaIV GGNNCC 4 cut(s) 88, 249, 858, 994
NmuCI GTSAC 3 cut(s) 478, 527, 673
NspI RCATGY 1 cut(s) 616
PceI AGGCCT 1 cut(s) 938
PfeI GAWTC 1 cut(s) 464
PflMI CCANNNNNTGG 2 cut(s) 587, 808
PkrI GCNGC 3 cut(s) 7, 723, 897
PleI GAGTC 2 cut(s) 69, 198
PpsI GAGTC 2 cut(s) 69, 198
PpuMI RGGWCCY 2 cut(s) 247, 993
Psp5II RGGWCCY 2 cut(s) 247, 993
Psp6I CCWGG 4 cut(s) 70, 600, 801, 933
PspEI GGTNACC 1 cut(s) 797
PspFI CCCAGC 2 cut(s) 238, 989
PspGI CCWGG 4 cut(s) 70, 600, 801, 933
PspN4I GGNNCC 4 cut(s) 88, 249, 858, 994
PspPI GGNCC 3 cut(s) 86, 247, 993
PspPPI RGGWCCY 2 cut(s) 247, 993
PstNI CAGNNNCTG 1 cut(s) 668
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 2 cut(s) 268, 288
RsaNI GTAC 2 cut(s) 267, 287
SaqAI TTAA 3 cut(s) 750, 822, 846
SatI GCNGC 3 cut(s) 6, 722, 896
Sau3AI GATC 4 cut(s) 322, 490, 629, 650
Sau96I GGNCC 3 cut(s) 86, 247, 993
SchI GAGTC 2 cut(s) 69, 198
ScrFI CCNGG 4 cut(s) 72, 602, 803, 935
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 1 cut(s) 143
SinI GGWCC 3 cut(s) 86, 247, 993
SmlI CTYRAG 3 cut(s) 77, 198, 869
SmoI CTYRAG 3 cut(s) 77, 198, 869
Sse9I AATT 5 cut(s) 187, 515, 756, 776, 843
SseBI AGGCCT 1 cut(s) 938
SsiI CCGC 2 cut(s) 436, 904
SspI AATATT 1 cut(s) 106
SspMI CTAG 9 cut(s) 18, 126, 135, 276, 306, 687, 954, 978, 1005
StuI AGGCCT 1 cut(s) 938
StyD4I CCNGG 4 cut(s) 70, 600, 801, 933
StyI CCWWGG 3 cut(s) 243, 444, 946
TaaI ACNGT 3 cut(s) 143, 258, 585
TaqI TCGA 2 cut(s) 313, 462
TasI AATT 5 cut(s) 187, 515, 756, 776, 843
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 3 cut(s) 750, 822, 846
Tru9I TTAA 3 cut(s) 750, 822, 846
TscAI CASTG 1 cut(s) 590
TseFI GTSAC 3 cut(s) 478, 527, 673
TseI GCWGC 3 cut(s) 5, 721, 895
Tsp45I GTSAC 3 cut(s) 478, 527, 673
TspDTI ATGAA 4 cut(s) 181, 312, 687, 954
TspRI CASTG 1 cut(s) 590
Van91I CCANNNNNTGG 2 cut(s) 587, 808
VpaK11BI GGWCC 3 cut(s) 86, 247, 993
XagI CCTNNNNNAGG 1 cut(s) 448
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 2 cut(s) 809, 953
XspI CTAG 9 cut(s) 18, 126, 135, 276, 306, 687, 954, 978, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.