Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001262

Physical Location & Seq

Genomic Coordinates Forward (+)

993687 .. 994173

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGATTGATTCAGATGAGGAATTGGCAACGCTCCTTACTGGTTACCAGGACATGGTTGGCCTTCTTAATGCGCAGAAAGTAGAGCAGATTAACACACAGTTCTTAATTTTGGTTGTTGATGAATTTGCATTAGCAGTAGGGATTAGAGATATAGCAAAACACTTTGAAGTGATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000993 GO:0001098 GO:0001099 GO:0001101 GO:0001932 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008284 GO:0008607 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0009889 GO:0009892 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019887 GO:0019899 GO:0023051 GO:0030234 GO:0031248 GO:0031323 GO:0031326 GO:0031399 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042127 GO:0042221 GO:0042325 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043549 GO:0043609 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045859 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051239 GO:0051246 GO:0051252 GO:0051276 GO:0051338 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070063 GO:0070887 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAXNEB

Protein Analysis

59

Amino Acids

6.61

Weight (kDa)

4.1

Isoelectric Point (pI)

11.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11220 AT3G11220
fragaria_vesca	FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_1g19290 FvH4_7g07230 FvH4_7g07230
malus_domestica	MD01G1042400.v1.1 MD01G1042700.v1.1
prunus_persica	Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.1G076500_v2.0.a1 Prupe.6G206700_v2.0.a1
pyrus_communis	pycom01g06960
rosa_chinensis	RchiOBHm_Chr2g0110581 RchiOBHm_Chr6g0270301 RchiOBHm_Chr6g0270401
rosa_laevigata	RLG00000013794 RLG00000013800 RLG00000017812 RLG00000017814 RLG00000017817 RLG00000017818 RLG00000017820 RLG00000017823 RLG00000017826
rosa_multiflora	Rmu_sc0009479.1_g000015
rosa_roxburghii	Rroxscaffold_2G00133130 Rroxscaffold_7G00198000
rosa_rugosa	Rorug06G0054200 Rorug06G0054300 Rorug06G0054400 Rorug06G0054500
rosa_samantha	Rh1DG006700 Rh2AG220300 Rh2AG587100 Rh2CG222800 Rh2DG226300 Rh2DG226700 Rh6AG172800 Rh6AG173200 Rh6BG177100 Rh6DG164600 Rh6DG165100
rosa_wichuraiana	Rw0G006780 Rw0G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	99
BstEII	GGTNACC	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	73
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	1 cut(s)	60
CviKI_1	RGCY	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	55
FaiI	YATR	4 cut(s)	53, 152, 176, 178
FatI	CATG	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	8
Hpy188I	TCNGA	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	3 cut(s)	24, 32, 59
MaeIII	GTNAC	1 cut(s)	41
MluCI	AATT	3 cut(s)	20, 105, 122
MnlI	CCTC	1 cut(s)	10
MseI	TTAA	3 cut(s)	66, 90, 104
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NlaIII	CATG	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	66, 90, 104
ScrFI	CCNGG	1 cut(s)	47
SgeI	CNNG	4 cut(s)	51, 58, 59, 64
Sse9I	AATT	3 cut(s)	20, 105, 122
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	99
TasI	AATT	3 cut(s)	20, 105, 122
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	66, 90, 104
Tru9I	TTAA	3 cut(s)	66, 90, 104
TspDTI	ATGAA	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.