Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

5676749 .. 5678099

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCAATGTTAAAGAACAAACACATGACCGTCTCATTGATCTTGGTGTGTCTCGTTGTGGTGTCTCCAATGGCTGAGGCTCAGCTTGGTCTTGGTGGTAGTGGTGGTCTTGGTGGTCTTATTGGGGGTCTTGTTGGGGGTCTCGGTGGTCTGGTTGGTGGTCTTGTAGGGGGTATTCTCAATCTCGTCAATATCAATGGGGTTGTCTTTTGCTCTCTCAATGGTGCTCCCAGTGGCACTTCCACTCCTGCTTTCGCTAATGCAGGAGTTGAGCTCCAGTGCGGAAGGCAAAACAGGGTCGTTTCAACAGCGACCACGAATGCTGCCGGATTATTCTCGCTTCCTACGGACTCAATTCAGATGTTACTTTCCACACTTCTCTCTGATTGTCGGGTCGTCGTCACGACCCCTCTCTCCACCTGCAACGCCAACCTCCCTTCCGTTGGCAACCTCGTCTCACGGTTAGCCATGATCGGCAATAGTCTCACCGGCCTCCTCAACATCATCAGTATCATCCCTGCCGGCTTTGGTCTTCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

180

Amino Acids

17.86

Weight (kDa)

8.39

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	428
AciI	CCGC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	1 cut(s)	306
AluBI	AGCT	2 cut(s)	85, 274
AluI	AGCT	2 cut(s)	85, 274
Alw21I	GWGCWC	2 cut(s)	229, 276
Alw26I	GTCTC	6 cut(s)	37, 56, 69, 146, 460, 488
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	2 cut(s)	229, 276
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	310
BcoDI	GTCTC	6 cut(s)	37, 56, 69, 146, 460, 488
BfuAI	ACCTGC	1 cut(s)	428
BisI	GCNGC	1 cut(s)	324
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	2 cut(s)	488, 521
Bse1I	ACTGG	2 cut(s)	231, 277
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	66, 95
BseNI	ACTGG	2 cut(s)	231, 277
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	229, 276
BsiSI	CCGG	3 cut(s)	327, 489, 522
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	6 cut(s)	37, 56, 69, 146, 460, 488
BsmBI	CGTCTC	2 cut(s)	37, 460
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	229, 276
Bsp143I	GATC	2 cut(s)	39, 471
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	67, 94
BspMI	ACCTGC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	488, 521
BsrI	ACTGG	2 cut(s)	231, 277
BssAI	RCCGGY	2 cut(s)	488, 521
BssMI	GATC	2 cut(s)	39, 471
Bst4CI	ACNGT	2 cut(s)	31, 462
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	75, 81
BstF5I	GGATG	1 cut(s)	513
BstKTI	GATC	2 cut(s)	42, 474
BstMAI	GTCTC	6 cut(s)	37, 56, 69, 146, 460, 488
BstMBI	GATC	2 cut(s)	39, 471
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	238, 284
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	523
Cfr10I	RCCGGY	2 cut(s)	488, 521
CviAII	CATG	2 cut(s)	25, 469
CviJI	RGCY	7 cut(s)	74, 80, 85, 274, 467, 492, 525
CviKI_1	RGCY	7 cut(s)	74, 80, 85, 274, 467, 492, 525
DdeI	CTNAG	2 cut(s)	75, 81
DpnI	GATC	2 cut(s)	41, 473
DpnII	GATC	2 cut(s)	39, 471
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	2 cut(s)	37, 460
FaeI	CATG	2 cut(s)	28, 472
FaiI	YATR	2 cut(s)	26, 470
FatI	CATG	2 cut(s)	24, 468
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	3 cut(s)	327, 489, 522
Hin1II	CATG	2 cut(s)	28, 472
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	3 cut(s)	327, 489, 522
HphI	GGTGA	1 cut(s)	478
Hpy188I	TCNGA	2 cut(s)	360, 385
Hpy188III	TCNNGA	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	2 cut(s)	279, 447
HpyCH4III	ACNGT	2 cut(s)	31, 462
HpyCH4V	TGCA	2 cut(s)	263, 423
HpyF3I	CTNAG	2 cut(s)	75, 81
Hsp92II	CATG	2 cut(s)	28, 472
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	39, 471
LmnI	GCTCC	2 cut(s)	232, 279
Lsp1109I	GCAGC	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	363, 400
MalI	GATC	2 cut(s)	41, 473
MboI	GATC	2 cut(s)	39, 471
MboII	GAAGA	1 cut(s)	524
MhlI	GDGCHC	2 cut(s)	229, 276
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	6 cut(s)	70, 420, 443, 461, 503, 506
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	2 cut(s)	11, 537
MspI	CCGG	3 cut(s)	327, 489, 522
Mva1269I	GAATGC	1 cut(s)	325
NaeI	GCCGGC	1 cut(s)	523
NdeII	GATC	2 cut(s)	39, 471
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	2 cut(s)	28, 472
NmuCI	GTSAC	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	428
PctI	GAATGC	1 cut(s)	325
PdiI	GCCGGC	1 cut(s)	523
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	11, 537
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	39, 471
SchI	GAGTC	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	229, 276
SetI	ASST	5 cut(s)	87, 276, 422, 435, 453
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	31, 462
TasI	AATT	1 cut(s)	354
Tru1I	TTAA	2 cut(s)	11, 537
Tru9I	TTAA	2 cut(s)	11, 537
TscAI	CASTG	2 cut(s)	238, 284
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	400
TspGWI	ACGGA	2 cut(s)	362, 430
TspRI	CASTG	2 cut(s)	238, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.