Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

50894076 .. 50895708

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG256600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTCCCTCCAAAAGGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGCAGTTGTTCCGATAGCTCAAGGAGGCCTCTTCGGGAATCTTGTTGATCTCATCCGCATCCAAGGCAGAATCTTTTGCAGTGCCAATGGCGGTGCCACTGTTGGTACCAACGGCGCCATTCTTACCCCAGCATTTGCAAATGCTACCGTCCAACTACGTTGCGGAGCAGGAAATGGTCCTGTGCTTGGAACTGTGGAAACCAACTCCGACGGAATGTTTTCAATCTTGTTAAACAGATCCTACTTTAAAACAGCTCAAATATCGTCCGAATGCCGTGTTGTGGTTACAACACCACTTGCCAGTTGCAACGCCACCCTCGCTTCAGCCGGAAGTCTCACATCCATCTTGACACCACTCGGAAACACCACTGTTGGCCTCTTGCCCATCGTCAATTTCGGTACATTCGGGATGTTCAATTACACCAATGTAACAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

165

Amino Acids

16.91

Weight (kDa)

9.04

Isoelectric Point (pI)

20.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	3 cut(s)	149, 161, 170
AciI	CCGC	3 cut(s)	112, 147, 219
AclWI	GGATC	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	163, 457
AfiI	CCNNNNNNNGG	3 cut(s)	15, 242, 337
AgsI	TTSAA	2 cut(s)	279, 472
AluBI	AGCT	2 cut(s)	74, 311
AluI	AGCT	2 cut(s)	74, 311
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	2 cut(s)	82, 430
ApeKI	GCWGC	2 cut(s)	47, 56
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	274
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	3 cut(s)	149, 161, 170
BbvI	GCAGC	2 cut(s)	34, 68
BccI	CCATC	2 cut(s)	407, 449
BceAI	ACGGC	2 cut(s)	184, 315
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	2 cut(s)	48, 57
BlsI	GCNGC	2 cut(s)	49, 58
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	4 cut(s)	6, 151, 163, 172
BmsI	GCATC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 242, 337
Bse1I	ACTGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	4 cut(s)	108, 114, 395, 471
BseLI	CCNNNNNNNGG	3 cut(s)	15, 242, 337
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	34, 68
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	84, 432
BshNI	GGYRCC	3 cut(s)	149, 161, 170
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	3 cut(s)	15, 242, 337
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	84, 432
Bsp143I	GATC	2 cut(s)	103, 293
BspACI	CCGC	3 cut(s)	112, 147, 219
BspANI	GGCC	2 cut(s)	84, 432
BspLI	GGNNCC	4 cut(s)	6, 151, 163, 172
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	3 cut(s)	149, 161, 170
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	103, 293
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	4 cut(s)	157, 205, 250, 427
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	4 cut(s)	108, 114, 395, 471
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	106, 296
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	103, 293
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 56, 120, 374
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	34, 68
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	84, 432
BtsCI	GGATG	4 cut(s)	108, 114, 395, 471
BtsI	GCAGTG	2 cut(s)	57, 142
BtsIMutI	CAGTG	4 cut(s)	57, 142, 153, 423
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	162, 456
CviJI	RGCY	6 cut(s)	5, 74, 84, 311, 383, 432
CviKI_1	RGCY	6 cut(s)	5, 74, 84, 311, 383, 432
CviQI	GTAC	2 cut(s)	162, 456
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	2 cut(s)	105, 295
DpnII	GATC	2 cut(s)	103, 293
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	48, 57
FokI	GGATG	4 cut(s)	95, 101, 382, 478
Fsp4HI	GCNGC	2 cut(s)	48, 57
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	48, 57
GsaI	CCCAGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	84, 432
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	94, 126
HpaII	CCGG	1 cut(s)	384
Hpy188I	TCNGA	4 cut(s)	69, 265, 325, 416
Hpy188III	TCNNGA	3 cut(s)	91, 403, 463
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4III	ACNGT	4 cut(s)	157, 205, 250, 427
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	50, 135, 194, 363
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 56, 120, 374
HpySE526I	ACGT	1 cut(s)	214
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	1 cut(s)	171
KasI	GGCGCC	1 cut(s)	170
KpnI	GGTACC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	103, 293
LmnI	GCTCC	2 cut(s)	10, 221
LpnPI	CCDG	5 cut(s)	198, 210, 249, 370, 397
Lsp1109I	GCAGC	2 cut(s)	34, 68
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	340, 484
MalI	GATC	2 cut(s)	105, 295
MboI	GATC	2 cut(s)	103, 293
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	4 cut(s)	448, 472, 489, 493
Mly113I	GGCGCC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	232, 288
MnlI	CCTC	6 cut(s)	19, 47, 74, 95, 383, 443
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	4 cut(s)	287, 303, 492, 496
MspI	CCGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	53, 56, 120, 374
NarI	GGCGCC	1 cut(s)	171
NdeII	GATC	2 cut(s)	103, 293
NlaIV	GGNNCC	4 cut(s)	6, 151, 163, 172
PacI	TTAATTAA	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	84
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	94, 126
PkrI	GCNGC	2 cut(s)	49, 58
PluTI	GGCGCC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	4 cut(s)	6, 151, 163, 172
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	2 cut(s)	163, 457
RsaNI	GTAC	2 cut(s)	162, 456
SaqAI	TTAA	4 cut(s)	287, 303, 492, 496
SatI	GCNGC	2 cut(s)	48, 57
Sau3AI	GATC	2 cut(s)	103, 293
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	3 cut(s)	76, 217, 313
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	4 cut(s)	448, 472, 489, 493
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	112, 147, 219
SspDI	GGCGCC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	4 cut(s)	157, 205, 250, 427
TaiI	ACGT	1 cut(s)	217
TasI	AATT	4 cut(s)	448, 472, 489, 493
TfiI	GAWTC	2 cut(s)	94, 126
Tru1I	TTAA	4 cut(s)	287, 303, 492, 496
Tru9I	TTAA	4 cut(s)	287, 303, 492, 496
TscAI	CASTG	4 cut(s)	57, 142, 160, 430
TseI	GCWGC	2 cut(s)	47, 56
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	4 cut(s)	57, 142, 160, 430
VpaK11BI	GGWCC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	492
XagI	CCTNNNNNAGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.