Rmu_sc0000744.1_g000139

Phylloplanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000744.1
OG0002452
Physical Location & Seq
Forward (+)
517653 .. 520873
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000744.1_g000139.1.cds

Sequence Viewer

Length: 600 bp
atgcaaatagatgctaccgtcctactacgttgcggagcaggaaataatggtcctgtgcttggaactgtggaaaccaactccgacggaatgttttcaatcttgttagacggttcctactttaaagcagctcaaatatcgcccgaatgccgtgttgtggttacaacaccacttgtcagttgcaacgccaccctcgcttcacccggaagtctcacatccaccttgacaccactcggaaacaccactgttggcctcttgcccatcgtcaatttcgaagccgactttcagtgccaccaaaccctctgccaacgtacttcggtcctagtctcctcgggagccaacagtagtgccgcaaccacaacgtttacagaaccagccaagcaaggaagctcagcaaaagtcctcgccacgaggcacaaagaatacagcgatgaggttggtgctctcctagtctacaattgctcgatagaagccaggtcaagggacacccccgacgacctcactcgacggtgctggcacgccccctcaagaaaagagactgttgaccagctgcaacaaaattggagccaaacattttggcacgcccagtgggacatactatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

199

Amino Acids

21.5

Weight (kDa)

5.5

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 450
AciI CCGC 2 cut(s) 33, 348
AclI AACGTT 1 cut(s) 359
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 3 cut(s) 59, 154, 477
AgsI TTSAA 1 cut(s) 96
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 3 cut(s) 128, 387, 547
AluI AGCT 3 cut(s) 128, 387, 547
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 3 cut(s) 212, 328, 527
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 125, 547
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 50, 316
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 270
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 2 cut(s) 50, 316
BauI CACGAG 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 137, 534
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 472
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 3 cut(s) 212, 328, 527
BfaI CTAG 2 cut(s) 320, 446
BisI GCNGC 3 cut(s) 126, 348, 548
BlpI GCTNAGC 1 cut(s) 388
BlsI GCNGC 3 cut(s) 127, 349, 549
Bme1390I CCNGG 2 cut(s) 201, 472
Bme18I GGWCC 2 cut(s) 50, 316
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 50, 316
BmiI GGNNCC 3 cut(s) 112, 334, 563
BmrFI CCNGG 2 cut(s) 201, 472
BmrI ACTGGG 1 cut(s) 577
BmuI ACTGGG 1 cut(s) 577
Bpu1102I GCTNAGC 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 154, 477
Bse1I ACTGG 1 cut(s) 583
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 59, 154, 477
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 2 cut(s) 137, 534
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 3 cut(s) 59, 154, 477
BsmAI GTCTC 3 cut(s) 212, 328, 527
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 442
Bsp1720I GCTNAGC 1 cut(s) 388
BspACI CCGC 2 cut(s) 33, 348
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 401
BspLI GGNNCC 3 cut(s) 112, 334, 563
BspT104I TTCGAA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 327
BssSI CACGAG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 7 cut(s) 19, 67, 110, 244, 341, 507, 538
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 512, 516, 579
BstDEI CTNAG 1 cut(s) 388
BstF5I GGATG 1 cut(s) 212
BstMAI GTCTC 3 cut(s) 212, 328, 527
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 199, 470
BstV1I GCAGC 2 cut(s) 137, 534
BsuRI GGCC 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 212
BtsIMutI CAGTG 3 cut(s) 240, 290, 590
Cac8I GCNNGC 3 cut(s) 512, 516, 579
Cfr13I GGNCC 2 cut(s) 50, 316
Csp6I GTAC 1 cut(s) 309
CviJI RGCY 9 cut(s) 128, 249, 275, 335, 374, 387, 470, 547, 564
CviKI_1 RGCY 9 cut(s) 128, 249, 275, 335, 374, 387, 470, 547, 564
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 1 cut(s) 388
DraI TTTAAA 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 50, 316
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 470
FaiI YATR 2 cut(s) 593, 598
FaqI GGGAC 1 cut(s) 494
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 126, 348, 548
FokI GGATG 1 cut(s) 199
Fsp4HI GCNGC 3 cut(s) 126, 348, 548
FspBI CTAG 2 cut(s) 320, 446
GluI GCNGC 3 cut(s) 126, 348, 548
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 201
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 3 cut(s) 363, 451, 541
Hpy188I TCNGA 2 cut(s) 82, 233
Hpy188III TCNNGA 2 cut(s) 330, 525
Hpy8I GTNNAC 3 cut(s) 363, 451, 541
Hpy99I CGWCG 3 cut(s) 86, 494, 507
HpyCH4III ACNGT 7 cut(s) 19, 67, 110, 244, 341, 507, 538
HpyCH4IV ACGT 3 cut(s) 28, 307, 359
HpyCH4V TGCA 3 cut(s) 4, 180, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 388
HpySE526I ACGT 3 cut(s) 28, 307, 359
LmnI GCTCC 3 cut(s) 35, 332, 561
LpnPI CCDG 9 cut(s) 24, 66, 214, 384, 457, 484, 496, 557, 596
Lsp1109I GCAGC 2 cut(s) 137, 534
MaeI CTAG 2 cut(s) 320, 446
MaeII ACGT 3 cut(s) 28, 307, 359
MaeIII GTNAC 1 cut(s) 157
MfeI CAATTG 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 3 cut(s) 265, 454, 556
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 9 cut(s) 200, 260, 308, 337, 402, 410, 424, 506, 532
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 201, 472
MunI CAATTG 1 cut(s) 454
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 201
NlaIV GGNNCC 3 cut(s) 112, 334, 563
NspV TTCGAA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 127, 349, 549
Psp1406I AACGTT 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 3 cut(s) 112, 334, 563
PspPI GGNCC 2 cut(s) 50, 316
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 3 cut(s) 126, 348, 548
Sau96I GGNCC 2 cut(s) 50, 316
ScrFI CCNGG 2 cut(s) 201, 472
SduI GDGCHC 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 270
SinI GGWCC 2 cut(s) 50, 316
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 3 cut(s) 265, 454, 556
SsiI CCGC 2 cut(s) 33, 348
SspMI CTAG 2 cut(s) 320, 446
StyD4I CCNGG 2 cut(s) 199, 470
TaaI ACNGT 7 cut(s) 19, 67, 110, 244, 341, 507, 538
TaiI ACGT 3 cut(s) 31, 310, 362
TaqI TCGA 3 cut(s) 270, 461, 502
TaqII GACCGA 1 cut(s) 304
TasI AATT 3 cut(s) 265, 454, 556
TauI GCSGC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 3 cut(s) 247, 290, 590
TseI GCWGC 2 cut(s) 125, 547
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 3 cut(s) 247, 290, 590
VpaK11BI GGWCC 2 cut(s) 50, 316
XmiI GTMKAC 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 2 cut(s) 320, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.