Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Reverse (-)

45065952 .. 45067114

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCTCCTTCAAAACACTTGTCTTTGTGTCACTCTTGGTTATTGCTGCACTGGCAGTAGTTCCAATCGCCAAAGCCCAACTTGGTGGGCTCGGTGGGCTTCTTGGGCTAATACGCATACAAGGGACTCTGTTTTGCACGGCCAATGGCCGTGTCAGTAATGCTGGCGCCTCCCTTACACCAGTATTCCCAAATGCTACAGTCCAATTGCAATGTGGGTCAGGAAATGTGGTATCTACCGCTATTACAAATACCTCAGGACTCTTTTCAATCGTGCTAGATCCTCTCCAGTTTCTTCTGTCTTCACTATTGTCTAATTGCAAGCTCGTTGTTAGCACACCACTCTCCAGCTGCAACTCTAGTTTGTCTGGAACCACGATACTCCAATCTACCTTGCAGCTCATTGGAACAACCCTCGCGGGCCTCCTCAGCATCATCAATCTCATTCCAGCCGGCTTCAGCCCCATCATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

158

Amino Acids

15.99

Weight (kDa)

9.25

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	419
AciI	CCGC	2 cut(s)	240, 419
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	141, 148
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	13, 270
AluBI	AGCT	3 cut(s)	325, 351, 400
AluI	AGCT	3 cut(s)	325, 351, 400
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	4 cut(s)	3, 141, 148, 421
ApeKI	GCWGC	3 cut(s)	47, 351, 397
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	3 cut(s)	34, 338, 409
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	2 cut(s)	135, 156
BfaI	CTAG	2 cut(s)	278, 360
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	3 cut(s)	48, 352, 398
BlsI	GCNGC	3 cut(s)	49, 353, 399
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	169, 373
BmsI	GCATC	1 cut(s)	441
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	272, 331
Bpu10I	CCTNAGC	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	57, 182, 289
Bse21I	CCTNAGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	270, 442
BseNI	ACTGG	3 cut(s)	57, 182, 289
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	34, 338, 409
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	4 cut(s)	5, 143, 150, 423
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	5, 143, 150, 423
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	2 cut(s)	240, 419
BspANI	GGCC	4 cut(s)	5, 143, 150, 423
BspCNI	CTCAG	2 cut(s)	269, 441
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	169, 373
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	3 cut(s)	57, 182, 289
BssAI	RCCGGY	1 cut(s)	452
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	166, 323, 421, 454
BstDEI	CTNAG	2 cut(s)	256, 428
BstFNI	CGCG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 97, 106, 429
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	34, 338, 409
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	256
BsuRI	GGCC	4 cut(s)	5, 143, 150, 423
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	166, 323, 421, 454
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	256, 428
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	2 cut(s)	141, 148
Eco24I	GRGCYC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	442
Eco81I	CCTNAGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	93
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaiI	YATR	1 cut(s)	119
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	139
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	48, 352, 398
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	48, 352, 398
FspBI	CTAG	2 cut(s)	278, 360
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	48, 352, 398
GsuI	CTGGAG	2 cut(s)	272, 331
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	5, 143, 150, 423
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	2 cut(s)	127, 261
HpaII	CCGG	1 cut(s)	453
Hpy188III	TCNNGA	3 cut(s)	222, 258, 369
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	6 cut(s)	50, 138, 211, 321, 354, 397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 97, 106, 429
HpyF3I	CTNAG	2 cut(s)	256, 428
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	280
Lsp1109I	GCAGC	3 cut(s)	34, 338, 409
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	278, 360
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	287, 294
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	206, 316, 472
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	121, 255
MnlI	CCTC	7 cut(s)	16, 181, 265, 294, 425, 434, 437
MroNI	GCCGGC	1 cut(s)	452
MseI	TTAA	2 cut(s)	471, 475
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	1 cut(s)	453
MunI	CAATTG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	53, 97, 106, 429
NaeI	GCCGGC	1 cut(s)	454
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	1 cut(s)	280
NgoMIV	GCCGGC	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	169, 373
NmuCI	GTSAC	1 cut(s)	30
PacI	TTAATTAA	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	49, 353, 399
PleI	GAGTC	2 cut(s)	121, 255
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	2 cut(s)	121, 255
PshBI	ATTAAT	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	169, 373
PspPI	GGNCC	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	471, 475
SatI	GCNGC	3 cut(s)	48, 352, 398
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	2 cut(s)	121, 255
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	5 cut(s)	257, 327, 353, 395, 402
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	169
Sse9I	AATT	3 cut(s)	206, 316, 472
SsiI	CCGC	2 cut(s)	240, 419
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	278, 360
TaaI	ACNGT	1 cut(s)	202
TasI	AATT	3 cut(s)	206, 316, 472
Tru1I	TTAA	2 cut(s)	471, 475
Tru9I	TTAA	2 cut(s)	471, 475
TscAI	CASTG	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	3 cut(s)	47, 351, 397
Tsp45I	GTSAC	1 cut(s)	30
TspRI	CASTG	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	2 cut(s)	278, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.