Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

45967385 .. 45968646

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGCCCTCCAAAAAGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGTAGTTGTTCCGATAGCTCAAGGGCAGATCATTGGAGGCTTCTTCGCGCCTCTTCTTAATCTCCTCCGCGTCCAAGGCATTGTCTTTTGCAGTACCAATGGTGGTGCCACCGTTGGTAGCAACGGCACCATTCTTACCCCAGCATTTGCAAATGCTACGGTCCAACTACGTTGCGGAGCAGGAAATGGTACTGTGCTTGGAATTGCGCAGACCAACTCCAACGGAGTGTTTTCAATCATGGTACAACGCCTTTCCTTATTAACACTACCTCAACTATTGTCCGGATGCCGTGTTGTGGTTACAACACCACTTGTCAGTTGCAACGCCACCCTCGCTTCAACCGGAACTCTCACATCGACCTTGACATCACTTGGAAACACCATTGCTGGCCCCTTGAACATCATCAATATCAATGCCGACCTGTTCGTTGGCACCGGGTTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

167

Amino Acids

16.84

Weight (kDa)

9.41

Isoelectric Point (pI)

18.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AccB1I	GGYRCC	4 cut(s)	4, 161, 182, 488
AccII	CGCG	2 cut(s)	104, 126
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	2 cut(s)	124, 231
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	151, 247, 300
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	3 cut(s)	291, 396, 454
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	3 cut(s)	7, 106, 265
AspS9I	GGNCC	2 cut(s)	217, 446
AsuC2I	CCSGG	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	4 cut(s)	4, 161, 182, 488
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	2 cut(s)	196, 330
BcnI	CCSGG	1 cut(s)	493
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	217, 446
BmiI	GGNNCC	5 cut(s)	6, 163, 184, 448, 490
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	130
BsaWI	WCCGGW	2 cut(s)	338, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	196
Bsh1236I	CGCG	2 cut(s)	104, 126
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	4 cut(s)	4, 161, 182, 488
BsiSI	CCGG	3 cut(s)	339, 399, 492
BslI	CCNNNNNNNGG	1 cut(s)	352
BsnI	GGCC	1 cut(s)	447
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	124, 231
BspANI	GGCC	1 cut(s)	447
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	2 cut(s)	104, 126
BspLI	GGNNCC	5 cut(s)	6, 163, 184, 448, 490
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	4 cut(s)	4, 161, 182, 488
BsrDI	GCAATG	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	130
Bst4CI	ACNGT	4 cut(s)	169, 217, 250, 501
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	445
BstEII	GGTNACC	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	2 cut(s)	104, 126
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 106, 265
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 132, 389
BstPI	GGTNACC	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	2 cut(s)	104, 126
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	3 cut(s)	7, 106, 265
Cfr13I	GGNCC	2 cut(s)	217, 446
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	150, 246, 299
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	3 cut(s)	74, 96, 447
CviKI_1	RGCY	3 cut(s)	74, 96, 447
CviQI	GTAC	3 cut(s)	150, 246, 299
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	495
EcoO65I	GGTNACC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	298
FaiI	YATR	1 cut(s)	296
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	48
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	3 cut(s)	6, 105, 264
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	339, 399, 492
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	3 cut(s)	7, 106, 265
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	3 cut(s)	5, 104, 263
HinP1I	GCGC	3 cut(s)	5, 104, 263
HpaII	CCGG	3 cut(s)	339, 399, 492
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	339
HpyCH4III	ACNGT	4 cut(s)	169, 217, 250, 501
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	50, 147, 206, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 132, 389
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	3 cut(s)	5, 104, 263
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	210, 222, 352, 412, 429, 491
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	332
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	355, 495
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	2 cut(s)	91, 101
MluCI	AATT	1 cut(s)	258
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	244, 300
MnlI	CCTC	7 cut(s)	19, 47, 86, 117, 131, 336, 398
MroI	TCCGGA	1 cut(s)	338
MseI	TTAA	2 cut(s)	114, 317
MspI	CCGG	3 cut(s)	339, 399, 492
MspR9I	CCNGG	1 cut(s)	493
MvnI	CGCG	2 cut(s)	104, 126
MwoI	GCNNNNNNNGC	3 cut(s)	53, 132, 389
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	5 cut(s)	6, 163, 184, 448, 490
NsbI	TGCGCA	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	5 cut(s)	6, 163, 184, 448, 490
PspPI	GGNCC	2 cut(s)	217, 446
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	3 cut(s)	151, 247, 300
RsaNI	GTAC	3 cut(s)	150, 246, 299
SaqAI	TTAA	2 cut(s)	114, 317
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	217, 446
ScrFI	CCNGG	1 cut(s)	493
SetI	ASST	5 cut(s)	76, 229, 328, 419, 480
SfaNI	GCATC	1 cut(s)	332
SfcI	CTRYAG	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	124, 231
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	4 cut(s)	169, 217, 250, 501
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	413
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	114, 317
Tru9I	TTAA	2 cut(s)	114, 317
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.