Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

41425277 .. 41426239

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG246900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGCCCTCCAAAAAGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGTAGTTGTTCCGATAGCTCAAGGGCAGATCAATTTTGGAGGCCTCTTCGCGCCTCTTCTTGGTCTCTTTCGCGTCCAAGGCACAGTCTTTTGCAGTGCCAATGGTGGTGCCACCGTTGGTACCAACGGCACCATTCTCACCCCAGCATTTGCAAATGCTACGGTCCAACTACGTTGCGGAGCAGGAAATGGTACTGTGTTTGGAACTGTGCAGACCAACTCCAACGGAGCGTTTTCAATCATGTTAGACTATTCCTTCTTTACACTAGCTCAAATATTGTCCGGATGTCGTGCTGTGGTTACAACACCACCTACCAGTTGCAACGCCACCCTCGCTTCAACCGGAACTCTCACGTCGAACTTGACATCACTTGGAAGCACCACCGCTGGCCCCTTGCCCATCATCAATATCAGTGCCAACCTGTTCGTTCGCACCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

165

Amino Acids

16.71

Weight (kDa)

9.35

Isoelectric Point (pI)

16.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	4 cut(s)	4, 164, 176, 185
AccII	CGCG	2 cut(s)	107, 129
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	2 cut(s)	234, 441
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	178, 250
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	294, 396
AjiI	CACGTC	1 cut(s)	411
AluBI	AGCT	2 cut(s)	74, 326
AluI	AGCT	2 cut(s)	74, 326
Alw26I	GTCTC	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	2 cut(s)	97, 445
ApeKI	GCWGC	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	176
AspLEI	GCGC	2 cut(s)	7, 109
AspS9I	GGNCC	2 cut(s)	220, 446
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	220
BanI	GGYRCC	4 cut(s)	4, 164, 176, 185
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	220, 446
BmiI	GGNNCC	5 cut(s)	6, 166, 178, 187, 448
BpuEI	CTTGAG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	2 cut(s)	338, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	2 cut(s)	107, 129
BshFI	GGCC	2 cut(s)	99, 447
BshNI	GGYRCC	4 cut(s)	4, 164, 176, 185
BsiSI	CCGG	2 cut(s)	339, 399
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	99, 447
Bso31I	GGTCTC	1 cut(s)	125
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	234, 441
BspANI	GGCC	2 cut(s)	99, 447
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	2 cut(s)	107, 129
BspLI	GGNNCC	5 cut(s)	6, 166, 178, 187, 448
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	4 cut(s)	4, 164, 176, 185
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	5 cut(s)	142, 172, 220, 253, 265
Bst6I	CTCTTC	2 cut(s)	107, 117
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	2 cut(s)	107, 129
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 109
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 135, 389
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	2 cut(s)	107, 129
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	99, 447
BtrI	CACGTC	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	2 cut(s)	57, 157
BtsIMutI	CAGTG	3 cut(s)	57, 157, 475
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	7, 109
Cfr13I	GGNCC	2 cut(s)	220, 446
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	177, 249
CviAII	CATG	2 cut(s)	298, 493
CviJI	RGCY	4 cut(s)	74, 99, 326, 447
CviKI_1	RGCY	4 cut(s)	74, 99, 326, 447
CviQI	GTAC	2 cut(s)	177, 249
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	107, 117
EarI	CTCTTC	2 cut(s)	107, 117
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	133
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	301, 496
FaiI	YATR	2 cut(s)	299, 494
FatI	CATG	2 cut(s)	297, 492
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	2 cut(s)	6, 108
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	99, 447
HapII	CCGG	2 cut(s)	339, 399
HgaI	GACGC	1 cut(s)	118
HhaI	GCGC	2 cut(s)	7, 109
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	301, 496
Hin6I	GCGC	2 cut(s)	5, 107
HinP1I	GCGC	2 cut(s)	5, 107
HpaII	CCGG	2 cut(s)	339, 399
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	339
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	5 cut(s)	142, 172, 220, 253, 265
HpyCH4IV	ACGT	2 cut(s)	229, 410
HpyCH4V	TGCA	5 cut(s)	50, 150, 209, 268, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 135, 389
HpySE526I	ACGT	2 cut(s)	229, 410
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	301, 496
HspAI	GCGC	2 cut(s)	5, 107
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	236, 284
LpnPI	CCDG	7 cut(s)	213, 225, 352, 385, 412, 429, 491
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	229, 410
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	2 cut(s)	94, 104
MluCI	AATT	1 cut(s)	88
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	247, 303
MnlI	CCTC	6 cut(s)	19, 47, 89, 110, 120, 398
MroI	TCCGGA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	339, 399
MvnI	CGCG	2 cut(s)	107, 129
MwoI	GCNNNNNNNGC	3 cut(s)	53, 135, 389
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	2 cut(s)	301, 496
NlaIV	GGNNCC	5 cut(s)	6, 166, 178, 187, 448
PceI	AGGCCT	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	49
PluTI	GGCGCC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	199
PspN4I	GGNNCC	5 cut(s)	6, 166, 178, 187, 448
PspPI	GGNCC	2 cut(s)	220, 446
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	178, 250
RsaNI	GTAC	2 cut(s)	177, 249
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	220, 446
SetI	ASST	6 cut(s)	76, 232, 328, 370, 413, 480
SfcI	CTRYAG	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	88
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	2 cut(s)	234, 441
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	5 cut(s)	142, 172, 220, 253, 265
TaiI	ACGT	2 cut(s)	232, 413
TaqI	TCGA	1 cut(s)	413
TasI	AATT	1 cut(s)	88
TscAI	CASTG	3 cut(s)	57, 157, 475
TseI	GCWGC	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	3 cut(s)	57, 157, 475
VpaK11BI	GGWCC	1 cut(s)	220
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.