Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

5681380 .. 5682362

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAGTTATCAAGAAACACATAACCTTCTCATTGGTCTTGTTGTGTCTCATTGTGGTGTCTCCAATGGCTAACGCTCAGAGTGGTCTTGGTGGTATCAATGTCCCCATTATCAATGGGGTTCTCTTTTGCACCATCAATGGCGCCCCTCTCAATGGCACTCCGGCCCCGGCTTTCGCTAATGCGGTCGTCCAGCTCCAGTGTGGAAACCTAAACAGAGTCGTAGCAGAAACAATTACGAACATTGCCGGATTATTCACGTTTTCTACAAACGGAATTCAGATATCCCTTCCCACACTCCTCAACGATTGTCGTATCGTCGTCCCAACCCCTCGCTCCAGCTGCGACGCCACCCTCCCTTCCACCGGACAACTGATCTCCCAGTTAAATCTCGTCGGCAGTATCGTCTCCGGCCTCCTCAACATAGTCGCTATCCTCCCAACCGGTTTTATCCCCACAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

154

Amino Acids

15.87

Weight (kDa)

8.39

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	276
AcyI	GRCGYC	2 cut(s)	144, 348
AfiI	CCNNNNNNNGG	2 cut(s)	155, 365
AgeI	ACCGGT	1 cut(s)	443
AluBI	AGCT	2 cut(s)	196, 342
AluI	AGCT	2 cut(s)	196, 342
Alw26I	GTCTC	3 cut(s)	53, 66, 412
AoxI	GGCC	2 cut(s)	165, 412
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	53, 66, 412
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	145, 168
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	376
BpmI	CTGGAG	2 cut(s)	182, 322
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	2 cut(s)	144, 348
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	2 cut(s)	365, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 365
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	199, 382
Bse3DI	GCAATG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	155, 365
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	199, 382
BseRI	GAGGAG	2 cut(s)	290, 407
BseXI	GCAGC	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	167, 414
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	6 cut(s)	164, 170, 249, 366, 411, 444
BslFI	GGGAC	2 cut(s)	89, 308
BslI	CCNNNNNNNGG	2 cut(s)	155, 365
BsmAI	GTCTC	3 cut(s)	53, 66, 412
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	89, 308
BsnI	GGCC	2 cut(s)	167, 414
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	167, 414
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	145, 168
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	199, 382
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	375
BssNI	GRCGYC	2 cut(s)	144, 348
BstACI	GRCGYC	2 cut(s)	144, 348
BstDEI	CTNAG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	3 cut(s)	53, 66, 412
BstMBI	GATC	1 cut(s)	375
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	167, 414
BtsIMutI	CAGTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	356
CspAI	ACCGGT	1 cut(s)	443
CviJI	RGCY	6 cut(s)	71, 167, 173, 196, 342, 414
CviKI_1	RGCY	6 cut(s)	71, 167, 173, 196, 342, 414
DdeI	CTNAG	1 cut(s)	78
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	412
FaiI	YATR	2 cut(s)	23, 425
FaqI	GGGAC	2 cut(s)	89, 308
Fnu4HI	GCNGC	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	343
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	343
GsuI	CTGGAG	2 cut(s)	182, 322
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	167, 414
HapII	CCGG	6 cut(s)	164, 170, 249, 366, 411, 444
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	144, 348
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	6 cut(s)	164, 170, 249, 366, 411, 444
Hpy188I	TCNGA	2 cut(s)	81, 282
Hpy188III	TCNNGA	1 cut(s)	13
Hpy99I	CGWCG	3 cut(s)	323, 350, 398
HpyAV	CCTTC	3 cut(s)	37, 299, 369
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	144, 348
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	201, 341
Lsp1109I	GCAGC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	260
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MluCI	AATT	2 cut(s)	234, 276
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	159, 311, 342, 365, 425, 428, 446
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	6 cut(s)	164, 170, 249, 366, 411, 444
MspR9I	CCNGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	342
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	375
NlaIV	GGNNCC	2 cut(s)	145, 168
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PinAI	ACCGGT	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	1 cut(s)	227
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	227
PspN4I	GGNNCC	2 cut(s)	145, 168
PspPI	GGNCC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	5 cut(s)	29, 198, 213, 263, 344
SfoI	GGCGCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	234, 276
SsiI	CCGC	1 cut(s)	185
SspDI	GGCGCC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	263
TasI	AATT	2 cut(s)	234, 276
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.