Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000830.1

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

40757 .. 41522

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000830.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggcctccttcaaaacacttgtctttgtgtcgctcttggttattgctgcactggcagtagttccaatcgccaaagcccaagttggcgggctcggtggtctcacggccgggcttcttgggcgaatacgcatacaagggattctgttttgcacggccaatggccgtgtcagtaatgctggcgcctcccttacaccagtattcccaaatgctacagtccaattacaatgtggatcaggaaatgtggtatctaccgctattacgaatacctcaggactcttttcaatcgtgctagatcctctccagtttcttctgtcttcactattgtctaattgcaagctcgttgttagcacaccactctccagctgcaactctagtttgtctggaaccacgatactccaatctaccttgcagctcattggaacaaccctcgcgggccccctcagcatcatcaatctcattccagccggcttcagccccatcattaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

162

Amino Acids

16.35

Weight (kDa)

9.58

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	1 cut(s)	431
AciI	CCGC	3 cut(s)	87, 252, 431
AclWI	GGATC	2 cut(s)	238, 287
AcoI	YGGCCR	3 cut(s)	105, 153, 160
AcuI	CTGAAG	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	13, 282
AluBI	AGCT	3 cut(s)	337, 363, 412
AluI	AGCT	3 cut(s)	337, 363, 412
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	238, 287
AoxI	GGCC	5 cut(s)	3, 105, 153, 160, 433
ApaI	GGGCCC	1 cut(s)	437
ApeKI	GCWGC	3 cut(s)	47, 363, 409
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	433, 434
AsuC2I	CCSGG	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	93, 437
BbsI	GAAGAC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	3 cut(s)	34, 350, 421
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	3 cut(s)	120, 147, 168
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	290, 372
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	3 cut(s)	48, 364, 410
BlsI	GCNGC	3 cut(s)	49, 365, 411
Bme1390I	CCNGG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	433, 434
BmiI	GGNNCC	4 cut(s)	181, 385, 435, 436
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	284, 343
Bpu10I	CCTNAGC	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	57, 194, 301
Bse21I	CCTNAGG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	282, 454
BseNI	ACTGG	3 cut(s)	57, 194, 301
BseSI	GKGCMC	1 cut(s)	437
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	34, 350, 421
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	5 cut(s)	5, 107, 155, 162, 435
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	108, 465
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	5 cut(s)	5, 107, 155, 162, 435
Bso31I	GGTCTC	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	93, 437
Bsp143I	GATC	2 cut(s)	230, 292
BspACI	CCGC	3 cut(s)	87, 252, 431
BspANI	GGCC	5 cut(s)	5, 107, 155, 162, 435
BspCNI	CTCAG	2 cut(s)	281, 453
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	4 cut(s)	181, 385, 435, 436
BspPI	GGATC	2 cut(s)	238, 287
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	57, 194, 301
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	2 cut(s)	230, 292
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	5 cut(s)	89, 178, 335, 433, 466
BstDEI	CTNAG	2 cut(s)	268, 440
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	233, 295
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	230, 292
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 118, 441
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	3 cut(s)	34, 350, 421
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	268
BsuRI	GGCC	5 cut(s)	5, 107, 155, 162, 435
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	5 cut(s)	89, 178, 335, 433, 466
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	433, 434
DdeI	CTNAG	2 cut(s)	268, 440
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	2 cut(s)	232, 294
DpnII	GATC	2 cut(s)	230, 292
EaeI	YGGCCR	3 cut(s)	105, 153, 160
EagI	CGGCCG	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	93, 437
Eco31I	GGTCTC	1 cut(s)	104
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	454
Eco81I	CCTNAGG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	434
EcoT38I	GRGCYC	2 cut(s)	93, 437
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaiI	YATR	1 cut(s)	131
FauI	CCCGC	2 cut(s)	80, 424
Fnu4HI	GCNGC	3 cut(s)	48, 364, 410
FriOI	GRGCYC	2 cut(s)	93, 437
Fsp4HI	GCNGC	3 cut(s)	48, 364, 410
FspBI	CTAG	2 cut(s)	290, 372
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	48, 364, 410
GsuI	CTGGAG	2 cut(s)	284, 343
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	5, 107, 155, 162, 435
HapII	CCGG	2 cut(s)	108, 465
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	139, 273
HpaII	CCGG	2 cut(s)	108, 465
Hpy188III	TCNNGA	3 cut(s)	234, 270, 381
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	50, 150, 333, 366, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 118, 441
HpyF3I	CTNAG	2 cut(s)	268, 440
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	230, 292
Lsp1109I	GCAGC	3 cut(s)	34, 350, 421
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	290, 372
MalI	GATC	2 cut(s)	232, 294
MboI	GATC	2 cut(s)	230, 292
MboII	GAAGA	2 cut(s)	299, 306
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	93, 437
MluCI	AATT	3 cut(s)	218, 328, 484
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	16, 193, 277, 306, 437, 449
MroNI	GCCGGC	1 cut(s)	464
MseI	TTAA	2 cut(s)	483, 487
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	2 cut(s)	108, 465
MspR9I	CCNGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	53, 118, 441
NaeI	GCCGGC	1 cut(s)	466
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	230, 292
NgoMIV	GCCGGC	1 cut(s)	464
NlaIV	GGNNCC	4 cut(s)	181, 385, 435, 436
PacI	TTAATTAA	1 cut(s)	487
PdiI	GCCGGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	49, 365, 411
PleI	GAGTC	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	267
PshBI	ATTAAT	1 cut(s)	483
PspN4I	GGNNCC	4 cut(s)	181, 385, 435, 436
PspOMI	GGGCCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	433, 434
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	483, 487
SatI	GCNGC	3 cut(s)	48, 364, 410
Sau3AI	GATC	2 cut(s)	230, 292
Sau96I	GGNCC	2 cut(s)	433, 434
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	93, 437
SetI	ASST	5 cut(s)	269, 339, 365, 407, 414
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	218, 328, 484
SsiI	CCGC	3 cut(s)	87, 252, 431
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	290, 372
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	3 cut(s)	218, 328, 484
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	483, 487
Tru9I	TTAA	2 cut(s)	483, 487
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	3 cut(s)	47, 363, 409
TspRI	CASTG	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	2 cut(s)	290, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.