Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00831

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Reverse (-)

2993 .. 3956

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTCCCTCCAAAAGGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGCAGTTGTTCCGATAGCTCAAGGAGGCCTCATCGGGAATATTCTTGATGTCATCCGCATCCAAGGCAGAATCTTTTGCAGTGCCAATGGCGGTGCCACTGTTGGTACCAACGGCGCCATTCTTACCCCACCATTTGCAAATGCTACCGTCCTACTACGTTGCGGAGCAGGAAATAATGGTCCTGTGCTTGGAACTGTGGAAACCAACTCCGACGGAATGTTTTCAATCTTGTTAGACGATTCCTACTTTAAAGCAGCTCAAATATCGTCCGAATGCCGTGTTGTGGTTACAACACCACTTGCCAGTTGCAACGCCACCCTCGCTTCACCCGGAAGTCTCACATCCACCTTGACACCACTCGGAAACACCACTGTTGGCCTCTTGCCCATCGTCAATTTCGGTATATCCGGGATGTTCAATTACACCAATGTAACAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

166

Amino Acids

16.89

Weight (kDa)

7.6

Isoelectric Point (pI)

26.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	3 cut(s)	149, 161, 170
AciI	CCGC	3 cut(s)	112, 147, 219
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	15, 245, 340
AgsI	TTSAA	2 cut(s)	282, 475
AluBI	AGCT	2 cut(s)	74, 314
AluI	AGCT	2 cut(s)	74, 314
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	2 cut(s)	82, 433
ApeKI	GCWGC	3 cut(s)	47, 56, 311
AseI	ATTAAT	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	277
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	387, 466
AsuHPI	GGTGA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	236
BanI	GGYRCC	3 cut(s)	149, 161, 170
BbvI	GCAGC	3 cut(s)	34, 68, 323
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	2 cut(s)	184, 318
BcnI	CCSGG	2 cut(s)	387, 466
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	3 cut(s)	48, 57, 312
BlsI	GCNGC	3 cut(s)	49, 58, 313
Bme1390I	CCNGG	2 cut(s)	387, 466
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	4 cut(s)	6, 151, 163, 172
BmrFI	CCNGG	2 cut(s)	387, 466
BmsI	GCATC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	387, 466
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 245, 340
Bse1I	ACTGG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	4 cut(s)	108, 114, 398, 474
BseLI	CCNNNNNNNGG	3 cut(s)	15, 245, 340
BseNI	ACTGG	1 cut(s)	360
BseXI	GCAGC	3 cut(s)	34, 68, 323
BshFI	GGCC	2 cut(s)	84, 435
BshNI	GGYRCC	3 cut(s)	149, 161, 170
BsiSI	CCGG	2 cut(s)	387, 465
BslI	CCNNNNNNNGG	3 cut(s)	15, 245, 340
BsmAI	GTCTC	1 cut(s)	398
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	84, 435
BspACI	CCGC	3 cut(s)	112, 147, 219
BspANI	GGCC	2 cut(s)	84, 435
BspLI	GGNNCC	4 cut(s)	6, 151, 163, 172
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	3 cut(s)	149, 161, 170
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	4 cut(s)	157, 205, 253, 430
BstACI	GRCGYC	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	4 cut(s)	108, 114, 398, 474
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstMAI	GTCTC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 56, 120, 377
BstSCI	CCNGG	2 cut(s)	385, 464
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	34, 68, 323
BsuRI	GGCC	2 cut(s)	84, 435
BtsCI	GGATG	4 cut(s)	108, 114, 398, 474
BtsI	GCAGTG	2 cut(s)	57, 142
BtsIMutI	CAGTG	4 cut(s)	57, 142, 153, 426
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	162
CviJI	RGCY	5 cut(s)	5, 74, 84, 314, 435
CviKI_1	RGCY	5 cut(s)	5, 74, 84, 314, 435
CviQI	GTAC	1 cut(s)	162
DinI	GGCGCC	1 cut(s)	172
DraI	TTTAAA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	236
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	118
FaiI	YATR	1 cut(s)	461
Fnu4HI	GCNGC	3 cut(s)	48, 57, 312
FokI	GGATG	4 cut(s)	95, 101, 385, 481
Fsp4HI	GCNGC	3 cut(s)	48, 57, 312
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	3 cut(s)	48, 57, 312
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	84, 435
HapII	CCGG	2 cut(s)	387, 465
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	126, 296
HpaII	CCGG	2 cut(s)	387, 465
HphI	GGTGA	1 cut(s)	375
Hpy188I	TCNGA	4 cut(s)	69, 268, 328, 419
Hpy188III	TCNNGA	2 cut(s)	91, 101
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	4 cut(s)	157, 205, 253, 430
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	4 cut(s)	50, 135, 194, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 56, 120, 377
HpySE526I	ACGT	1 cut(s)	214
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	1 cut(s)	171
KasI	GGCGCC	1 cut(s)	170
KpnI	GGTACC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	10, 221
LpnPI	CCDG	5 cut(s)	210, 252, 373, 400, 478
Lsp1109I	GCAGC	3 cut(s)	34, 68, 323
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	343, 487
MluCI	AATT	4 cut(s)	451, 475, 492, 496
Mly113I	GGCGCC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	6 cut(s)	19, 47, 74, 95, 386, 446
MroXI	GAANNNNTTC	1 cut(s)	277
MseI	TTAA	3 cut(s)	306, 495, 499
MspI	CCGG	2 cut(s)	387, 465
MspR9I	CCNGG	2 cut(s)	387, 466
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	53, 56, 120, 377
NarI	GGCGCC	1 cut(s)	171
NciI	CCSGG	2 cut(s)	387, 466
NlaIV	GGNNCC	4 cut(s)	6, 151, 163, 172
PacI	TTAATTAA	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	84
PctI	GAATGC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	126, 296
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	49, 58, 313
PluTI	GGCGCC	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	495
PspN4I	GGNNCC	4 cut(s)	6, 151, 163, 172
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	306, 495, 499
SatI	GCNGC	3 cut(s)	48, 57, 312
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	387, 466
SetI	ASST	4 cut(s)	76, 217, 316, 407
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	4 cut(s)	451, 475, 492, 496
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	112, 147, 219
SspDI	GGCGCC	1 cut(s)	170
SspI	AATATT	1 cut(s)	97
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	385, 464
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	4 cut(s)	157, 205, 253, 430
TaiI	ACGT	1 cut(s)	217
TasI	AATT	4 cut(s)	451, 475, 492, 496
TfiI	GAWTC	2 cut(s)	126, 296
Tru1I	TTAA	3 cut(s)	306, 495, 499
Tru9I	TTAA	3 cut(s)	306, 495, 499
TscAI	CASTG	4 cut(s)	57, 142, 160, 433
TseI	GCWGC	3 cut(s)	47, 56, 311
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	4 cut(s)	57, 142, 160, 433
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	495
XagI	CCTNNNNNAGG	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.