Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002452

Physical Location & Seq

Genomic Coordinates Forward (+)

18765671 .. 18766450

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCCTCCTTCAAAACACTAGTCTTTGTGTCGCTCTTGGTTATTGCTGCACTGGCAGTAGTTCCAATCGCCAAAGCCCAACTTGGCGGGCTCGGTGGTCTCACGGCCCGGCTTCTTGGGCTAATCCGCATACAAGGGACTCTGTTTTGCACGGCCAATGGCCGTGTCAGTAATGCTGGCGCCTCCCTTACACCAGTATTCCCAAATGCTACAGTTCAATTGCAATGTGGATCAGGAAATGTGGTATCTACCGCTATTACGAATACCTCAGGACTCTTTTCAATCGTGCTAGATCCTCTCCAGTTTCTTCTGTCTTCACTATTGTCTAATTGCAAGCTCGTTGTTAGCACACCACTCTCCAGCTGCAACTCTAGTTTGTCTGGAACCACGATACTCCAATCTACCTTGCAGCTCATTGGAACAACCCTCGCAGGCCTCCTCACCATCATCAATCTCATTCCAGCCGGCTTCAGCCCCATCATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

163

Amino Acids

16.44

Weight (kDa)

9.58

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16660 AT3G16660 AT3G16670
fragaria_vesca	FvH4_4g18430 FvH4_4g18430 FvH4_4g18430 FvH4_4g18480
malus_domestica	MD00G1127800.v1.1
prunus_persica	Prupe.1G133600_v2.0.a1 Prupe.1G133700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0422901 RchiOBHm_Chr4g0422991
rosa_laevigata	RLG00000007593 RLG00000007596
rosa_multiflora	Rmu_sc0000744.1_g000139 Rmu_sc0000744.1_g000163 Rmu_sc0000830.1_g000011 Rmu_sc0002835.1_g000014
rosa_roxburghii	Rroxscaffold_5G00364790 Rroxscaffold_5G00364800 Rroxscaffold_5G00364960 Rroxscaffold_5G00365000 Rroxscaffold_5G00365020 Rroxscaffold_5G00365030 Rroxscaffold_5G00365090
rosa_rugosa	Rorug04G0182100 Rorug04G0182500 Rorug04G0183000
rosa_samantha	Rh4BG246400 Rh4BG246500 Rh4BG246600 Rh4BG246700 Rh4BG246800 Rh4BG246900 Rh4BG247500 Rh4CG256600 Rh4CG256900
rosa_wichuraiana	Rw0G015770 Rw0G018530 Rw0G022110 Rw4G020930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	3 cut(s)	87, 127, 252
AclWI	GGATC	2 cut(s)	238, 287
AcoI	YGGCCR	2 cut(s)	153, 160
AcuI	CTGAAG	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	13, 218, 282
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	3 cut(s)	337, 363, 412
AluI	AGCT	3 cut(s)	337, 363, 412
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	238, 287
AoxI	GGCC	5 cut(s)	3, 105, 153, 160, 433
ApeKI	GCWGC	3 cut(s)	47, 363, 409
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	34, 350, 421
BccI	CCATC	2 cut(s)	452, 485
BceAI	ACGGC	3 cut(s)	120, 147, 168
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	3 cut(s)	20, 290, 372
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	3 cut(s)	48, 364, 410
BlsI	GCNGC	3 cut(s)	49, 365, 411
Bme1390I	CCNGG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	181, 385
BmrFI	CCNGG	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	284, 343
BpuMI	CCSGG	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	57, 194, 301
Bse21I	CCTNAGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	3 cut(s)	57, 194, 301
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	3 cut(s)	34, 350, 421
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	5 cut(s)	5, 107, 155, 162, 435
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	109, 465
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	5 cut(s)	5, 107, 155, 162, 435
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	230, 292
BspACI	CCGC	3 cut(s)	87, 127, 252
BspANI	GGCC	5 cut(s)	5, 107, 155, 162, 435
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	2 cut(s)	181, 385
BspPI	GGATC	2 cut(s)	238, 287
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	57, 194, 301
BssAI	RCCGGY	1 cut(s)	464
BssMI	GATC	2 cut(s)	230, 292
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	5 cut(s)	89, 178, 335, 433, 466
BstDEI	CTNAG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	233, 295
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	230, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 118
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	34, 350, 421
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	268
BsuRI	GGCC	5 cut(s)	5, 107, 155, 162, 435
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	5 cut(s)	89, 178, 335, 433, 466
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	268
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	2 cut(s)	232, 294
DpnII	GATC	2 cut(s)	230, 292
EaeI	YGGCCR	2 cut(s)	153, 160
Eco147I	AGGCCT	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	454
Eco81I	CCTNAGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	93
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaiI	YATR	1 cut(s)	131
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FaqI	GGGAC	1 cut(s)	151
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	48, 364, 410
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	48, 364, 410
FspBI	CTAG	3 cut(s)	20, 290, 372
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	48, 364, 410
GsuI	CTGGAG	2 cut(s)	284, 343
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	5, 107, 155, 162, 435
HapII	CCGG	2 cut(s)	109, 465
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	139, 273
HpaII	CCGG	2 cut(s)	109, 465
HphI	GGTGA	1 cut(s)	433
Hpy188III	TCNNGA	3 cut(s)	234, 270, 381
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	6 cut(s)	50, 150, 223, 333, 366, 409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 118
HpyF3I	CTNAG	1 cut(s)	268
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	464
KroNI	GCCGGC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	230, 292
Lsp1109I	GCAGC	3 cut(s)	34, 350, 421
MaeI	CTAG	3 cut(s)	20, 290, 372
MalI	GATC	2 cut(s)	232, 294
MboI	GATC	2 cut(s)	230, 292
MboII	GAAGA	2 cut(s)	299, 306
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	218, 328, 484
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	133, 267
MnlI	CCTC	7 cut(s)	16, 193, 277, 306, 437, 446, 449
MroNI	GCCGGC	1 cut(s)	464
MseI	TTAA	2 cut(s)	483, 487
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	2 cut(s)	109, 465
MspR9I	CCNGG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	53, 118
NaeI	GCCGGC	1 cut(s)	466
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	230, 292
NgoMIV	GCCGGC	1 cut(s)	464
NlaIV	GGNNCC	2 cut(s)	181, 385
PacI	TTAATTAA	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	49, 365, 411
PleI	GAGTC	2 cut(s)	133, 267
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	2 cut(s)	133, 267
PshBI	ATTAAT	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	181, 385
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	483, 487
SatI	GCNGC	3 cut(s)	48, 364, 410
Sau3AI	GATC	2 cut(s)	230, 292
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	133, 267
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	5 cut(s)	269, 339, 365, 407, 414
SfcI	CTRYAG	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	3 cut(s)	218, 328, 484
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	3 cut(s)	87, 127, 252
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	3 cut(s)	20, 290, 372
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	3 cut(s)	218, 328, 484
Tru1I	TTAA	2 cut(s)	483, 487
Tru9I	TTAA	2 cut(s)	483, 487
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	3 cut(s)	47, 363, 409
TspRI	CASTG	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	483
XspI	CTAG	3 cut(s)	20, 290, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.