Rh4BG246700

Phylloplanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002452
Physical Location & Seq
Forward (+)
41397424 .. 41410035
12612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG246700.1

Sequence Viewer

Length: 540 bp
ATGGCGCCCTCCAAAAAGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGTAGTTGTTCCGATAGCTCAAGGGCAGATCAATTTTGGAGGCCTCTTCGCGCCTCTTCTTGGTCTCTTTCGCGTCCAAGGCACAGTCTTTTGCAGTGCCAATGGTGGTGCCACCGTTGGTACCAACGGCACCATTCTCACCCCAGCATTTGCAAATGCTACGGTCCAACTACGTTGCGGAGCAGGAAATGGTACTGTGTTTGGAACTGTGCAGACCAACTCCAACGGAGCGTTTTCAATCATGTTAGACTATTCCTTCTTTACACTAGCTCAAATATTGTCCGGATGTCGTGCTGTGGTTACAACACCACCTGCCAGTTGCAACGCCACCCTCGCTTCAACCGGAACTCTCACGTCGAACTTGACATCACTTGGAAGCACCACCGCTGGCCCCTTGCCCATCATCAATATCAGTGCCAACCTGTTCGTTCGCACCATCAACGTACTTGATCTCTTGGAGCTTGCAGGGCAGGCTTCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

179

Amino Acids

18.1

Weight (kDa)

8.77

Isoelectric Point (pI)

17.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
Acc65I GGTACC 1 cut(s) 176
AccB1I GGYRCC 4 cut(s) 4, 164, 176, 185
AccII CGCG 2 cut(s) 107, 129
AccIII TCCGGA 1 cut(s) 338
AciI CCGC 2 cut(s) 234, 441
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 178, 250, 501
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 294, 396
AjiI CACGTC 1 cut(s) 411
AluBI AGCT 3 cut(s) 74, 326, 517
AluI AGCT 3 cut(s) 74, 326, 517
Alw26I GTCTC 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 338
AoxI GGCC 2 cut(s) 97, 445
ApeKI GCWGC 1 cut(s) 47
Asp718I GGTACC 1 cut(s) 176
AspLEI GCGC 2 cut(s) 7, 109
AspS9I GGNCC 2 cut(s) 220, 446
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 220
BanI GGYRCC 4 cut(s) 4, 164, 176, 185
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 464, 500
BceAI ACGGC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 411
BmgT120I GGNCC 2 cut(s) 220, 446
BmiI GGNNCC 5 cut(s) 6, 166, 178, 187, 448
BpuEI CTTGAG 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 2 cut(s) 338, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 372
BseAI TCCGGA 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 107, 129
BshFI GGCC 2 cut(s) 99, 447
BshNI GGYRCC 4 cut(s) 4, 164, 176, 185
BsiSI CCGG 2 cut(s) 339, 399
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 99, 447
Bso31I GGTCTC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 338
Bsp143I GATC 2 cut(s) 84, 505
BspACI CCGC 2 cut(s) 234, 441
BspANI GGCC 2 cut(s) 99, 447
BspEI TCCGGA 1 cut(s) 338
BspFNI CGCG 2 cut(s) 107, 129
BspLI GGNNCC 5 cut(s) 6, 166, 178, 187, 448
BspMAI CTGCAG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 376
BspT107I GGYRCC 4 cut(s) 4, 164, 176, 185
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 84, 505
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 5 cut(s) 142, 172, 220, 253, 265
Bst6I CTCTTC 2 cut(s) 107, 117
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 445, 519, 528
BstF5I GGATG 1 cut(s) 347
BstFNI CGCG 2 cut(s) 107, 129
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 109
BstKTI GATC 2 cut(s) 87, 508
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 84, 505
BstMWI GCNNNNNNNGC 5 cut(s) 53, 135, 389, 523, 527
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 2 cut(s) 107, 129
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 99, 447
BtrI CACGTC 1 cut(s) 411
BtsCI GGATG 1 cut(s) 347
BtsI GCAGTG 2 cut(s) 57, 157
BtsIMutI CAGTG 3 cut(s) 57, 157, 475
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 445, 519, 528
CfoI GCGC 2 cut(s) 7, 109
Cfr13I GGNCC 2 cut(s) 220, 446
CseI GACGC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 177, 249, 500
CviAII CATG 1 cut(s) 298
CviJI RGCY 6 cut(s) 74, 99, 326, 447, 517, 530
CviKI_1 RGCY 6 cut(s) 74, 99, 326, 447, 517, 530
CviQI GTAC 3 cut(s) 177, 249, 500
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 86, 507
DpnII GATC 2 cut(s) 84, 505
Eam1104I CTCTTC 2 cut(s) 107, 117
EarI CTCTTC 2 cut(s) 107, 117
Eco130I CCWWGG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 301
FaiI YATR 2 cut(s) 299, 538
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 323
GlaI GCGC 2 cut(s) 6, 108
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 203
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 99, 447
HapII CCGG 2 cut(s) 339, 399
HgaI GACGC 1 cut(s) 118
HhaI GCGC 2 cut(s) 7, 109
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 2 cut(s) 5, 107
HinP1I GCGC 2 cut(s) 5, 107
HpaII CCGG 2 cut(s) 339, 399
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 5 cut(s) 142, 172, 220, 253, 265
HpyCH4IV ACGT 3 cut(s) 229, 410, 498
HpyCH4V TGCA 6 cut(s) 50, 150, 209, 268, 378, 521
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 135, 389, 523, 527
HpySE526I ACGT 3 cut(s) 229, 410, 498
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 2 cut(s) 5, 107
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 338
KpnI GGTACC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 84, 505
LmnI GCTCC 3 cut(s) 236, 284, 514
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 323
MaeII ACGT 3 cut(s) 229, 410, 498
MaeIII GTNAC 1 cut(s) 355
MalI GATC 2 cut(s) 86, 507
MboI GATC 2 cut(s) 84, 505
MboII GAAGA 2 cut(s) 94, 104
MluCI AATT 1 cut(s) 88
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 247, 303
MnlI CCTC 6 cut(s) 19, 47, 89, 110, 120, 398
MroI TCCGGA 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 339, 399
MvnI CGCG 2 cut(s) 107, 129
MwoI GCNNNNNNNGC 5 cut(s) 53, 135, 389, 523, 527
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 84, 505
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 5 cut(s) 6, 166, 178, 187, 448
PaqCI CACCTGC 1 cut(s) 376
PceI AGGCCT 1 cut(s) 99
PkrI GCNGC 1 cut(s) 49
PluTI GGCGCC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 5 cut(s) 6, 166, 178, 187, 448
PspPI GGNCC 2 cut(s) 220, 446
PstI CTGCAG 1 cut(s) 52
RsaI GTAC 3 cut(s) 178, 250, 501
RsaNI GTAC 3 cut(s) 177, 249, 500
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 84, 505
Sau96I GGNCC 2 cut(s) 220, 446
SetI ASST 8 cut(s) 76, 232, 328, 370, 413, 480, 501, 519
SfcI CTRYAG 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 88
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 2 cut(s) 234, 441
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 333
SspMI CTAG 1 cut(s) 323
StuI AGGCCT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 5 cut(s) 142, 172, 220, 253, 265
TaiI ACGT 3 cut(s) 232, 413, 501
TaqI TCGA 1 cut(s) 413
TasI AATT 1 cut(s) 88
TscAI CASTG 3 cut(s) 57, 157, 475
TseI GCWGC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 3 cut(s) 57, 157, 475
VpaK11BI GGWCC 1 cut(s) 220
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.